F23436

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23436

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23436

Determination of introduced cDNA(s)

  • RAFL02-10-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-H10 - Resource: pda00040

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-H10 - full reading 
    AGGGTTTTGA AGAGTCTCTC GTCGCCGTTT GTAATTCCTC TGTGAGCAAA 
    TCGACAAAAT GGGTCACTCT AATGTCTGGA ACTCTCATCC GAAGAAGTAC 
    GGTCCTGGAT CTCGTTTATG CCGTGTGTGC GGGAACTCAC ACGGGCTTAT 
    CAGGAAGTAT GGTTTGAATT GCTGCAGACA GTGTTTCCGC AGTAACGCCA 
    AGGAGATCGG ATTCATTAAG TACCGTTAAA GAGGCCTTTG ACTGATGCTT 
    ATAATACACA AACATGTTGG TGTTGATGAA TTGGCCTTGA ATCTTTTAAG 
    TTGTTGTTGC ATTCTTCTTT AAAGTTTATC TCTTATTTGG AACAATGATC 
    TTTTGGTTTT GATTAATATT TTGCTTGTT

    Gene models with high sequence identity

    1. AT3G43980.1 [+] show detail - Ribosomal protein S14p/S29e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S14 5.4e-19
    HMMPanther SUBFAMILY NOT NAMED 1.4e-38
    HMMPanther FAMILY NOT NAMED 1.4e-38

    See the detailed result >

    AT3G43980.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S14p/S29e family protein
    Computational Description
    Ribosomal protein S14p/S29e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: Ribosomal protein S14p/S29e family protein (TAIR:AT4G33865.1); Has 986 Blast hits to 986 proteins in 355 species: Archae - 225; Bacteria - 0; Metazoa - 331; Fungi - 136; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR