F23527

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23527

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23527

Determination of introduced cDNA(s)

  • RAFL09-18-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-18-F04 - Resource: pda01983

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-18-F04 - full reading 
    AATTCTAAAC CAAACAACAG ATTCTCATAA TCATCTCTTC TTTTTTCCTC 
    TTTACGAAAA GAAGAAAGAT CAAACCTTCC AAGTTTACAC AAAAAGAAAA 
    AAGAACGATG GCTCTTGTCA CCTTCTTGTT TATTGCTACC CTTGGAGCAA 
    TGACGTCACA TGTCAATGGT TACGCCGGAG GAGGTTGGGT CAACGCACAC 
    GCCACATTCT ACGGTGGTGG TGATGCTTCC GGCACAATGG GAGGTGCTTG 
    TGGATACGGA AACCTATATA GCCAAGGCTA TGGAACCAAC ACGGCGGCGC 
    TAAGCACGGC TCTATTCAAT AATGGTCTAA GTTGTGGTGC TTGCTTCGAG 
    ATAAGATGTC AAAACGATGG AAAATGGTGT CTTCCTGGCT CAATTGTCGT 
    CACAGCCACA AACTTTTGCC CTCCTAACAA CGCCTTACCG AACAACGCAG 
    GAGGTTGGTG TAACCCTCCT CAGCAGCATT TTGATCTCTC TCAGCCCGTA 
    TTTCAACGCA TCGCTCAATA CAGAGCCGGC ATTGTCCCCG TCGCTTACCG 
    AAGAGTGCCG TGCGTGAGAA GAGGAGGAAT AAGGTTTACG ATAAACGGAC 
    ACTCTTACTT CAACCTAGTT CTGATCACTA ACGTCGGAGG AGCCGGAGAT 
    GTTCACTCAG CGATGGTTAA AGGTTCAAGA ACTGGATGGC AAGCGATGTC 
    AAGAAACTGG GGACAGAACT GGCAGAGTAA CTCTTACCTT AACGGACAAT 
    CTCTCTCATT CAAAGTTACA ACAAGCGATG GCCAAACCAT TGTCTCTAAC 
    AACGTTGCTA ACGCAGGCTG GTCTTTCGGC CAGACCTTCA CAGGTGCGCA 
    GCTACGTTAG GAAGAGTGAT TCGGTGAAAA TTCATCTCAT TGATCGTGTG 
    GTATTGACGT GTTGTAGTAG AAGCAGTTAG AGAGAGGGGC ATGATAGTAA 
    TTTGGTCCTT TCTTTCAATT GAGGTTAACC TAAAAAGAAG TGGTGCTTCG 
    AGTGCTTGAT TTTGCACGAG GCCTTGATGA TGTCATCTTT TGGGAACCTT 
    TTCTTATCTT TCTTCATTTT TATTGGTAAG GTTTTATGTT ATACTGATGC 
    AGAGGTGGTA TTGAGTTGAA GTACCACCCG CTAGTAGTAG TAGTAGTCTC 
    TCGTGTCATT TGTATCCCTT CTCGAAGCGA GAGGGAGAGT TTTAGATTTT 
    ATTAATCTCG TTAAAGTCAT TTGTATGTTG TAAATTTTTC AATTTCTACA 
    AGTAAGAAAT ATTGGAGATT TGTTTGTTAT ATACTTTGTG TAATAAATTA 
    TATTCATATA AAAAAAAAAA AAGAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G69530.2 [+] show detail - expansin A1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pollen allergen, N-terminal 1.5e-46
    Gene3D Pollen allergen/expansin, C-terminal 1.9e-10
    HMMPfam Pollen allergen/expansin, C-terminal 3.3e-28
    HMMPfam Rare lipoprotein A 7.6e-27
    ProfileScan Expansin 45, endoglucanase-like 30.928
    ProfileScan Pollen allergen/expansin, C-terminal 20.977
    superfamily Barwin-related endoglucanase 1.1e-49
    superfamily Pollen allergen/expansin, C-terminal 2.8e-33
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin 3.9e-82
    FPrintScan Expansin/Lol pI 9.4e-51
    FPrintScan Expansin/Lol pI 9.4e-51
    FPrintScan Expansin/Lol pI 9.4e-51
    FPrintScan Expansin/Lol pI 9.4e-51
    FPrintScan Expansin/Lol pI 9.4e-51
    FPrintScan Expansin/Lol pI 9.4e-51
    HMMSmart no description 7.2e-57

    See the detailed result >

    AT1G69530.2

    Model type
    Protein coding
    Short Description
    expansin A1
    Curator Summary
    Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
    Computational Description
    expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Barwin-related endoglucanase (InterPro:IPR009009), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2218 Blast hits to 2214 proteins in 171 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 48; Plants - 2114; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR