F23611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23611

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23611

Determination of introduced cDNA(s)

RAFL07-10-M24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-M24 - Resource: pda17292

full reading [+] show sequence

CCCCCCCGAG TCACACAAAG AGTAAAGAAG AACAATGGCT TCCTCTATGC 
TCTCTTCCGC TACTATGGTT GCCTCTCCGG CTCAGGCCAC TATGGTCGCT 
CCTTTCAACG GACTTAAGTC CTCCGCTGCC TTCCCAGCCA CCCGCAAGGC 
TAACAACGAC ATTACTTCCA TCACAAGCAA CGGCGGAAGA GTTAACTGCA 
TGCAGGTGTG GCCTCCGATT GGAAAGAAGA AGTTTGAGAC TCTCTCTTAC 
CTTCCTGACC TTACCGATTC CGAATTGGCT AAGGAAGTTG ACTACCTTAT 
CCGCAACAAG TGGATTCCTT GTGTTGAATT CGAGTTGGAG CACGGATTTG 
TGTACCGTGA GCACGGTAAC TCACCCGGAT ACTATGATGG ACGGTACTGG 
ACAATGTGGA AGCTTCCCTT GTTCGGTTGC ACCGACTCCG CTCAAGTGTT 
GAAGGAAGTG GAAGAGTGCA AGAAGGAGTA CCCCAATGCC TTCATTAGGA 
TCATCGGATT CGACAACACC CGTCAAGTCC AGTGCATCAG TTTCATTGCC 
TACAAGCCAC CAAGCTTCAC CGGTTAATTT CCCTTTGCTT TTGTGTAAAC 
CTCAAAACTT TATCCCCCAT CTTTGATTTT ATCCCTTGTT TTTCTGCTTT 
TTTCTTCTTT CTTGGGTTTT AATTTCCGGA CTTAACGTTT GTTTTCCGGT 
TTGCGAGACA TATTCTATCG GATTCTCAAC TGTCTGATGA AAAAAAAAAA 
AAAAAAGAGC TCTTGGATCC AGATGCTGAT GAGTGTCAGC CTCGAAGCAG 
GAGACAGCTC GAGGATGTAG ATTATGTTTC TGTTGAATTT GAAGGGAAAA 
AGCTAGGTTG GCAAGATATT GCTACTTACA AGCCTCCTGA AGATGCTTTA 
TTCGCACACC CTAGGCTATT CAGAGCTTGT GTTCCACCGG GAATGCATCG 
TTTCAGAGGG AACATATGGG ATTTTGACAG CAAACCAAAA GTTATGCAGA 
CCCTCGGATA CCCTTTAACG ATGAATGATA GAATCAAGGA GATAACTGAA 
GCAAGAAACA TCGAACTTGG ACTCGGTTTA CAGCTCTGCT TCTTGCATCC 
TTCAAAGCAT AAGTTTGAAC ACCCGCGGTT TTGTTTTGAG CGGCTGGAAT 
ATGTAGGACA GAAGATACAG GACATAGCAA TGGCTGAACG TTTGTTAATG 
AAGCACTTGG ACGCACCAGG GAAGTGGTTG CAAGAGAAGC ATAGACGTCT 
ATTAATGAAC AAATTCTGCG GCCGGTATCT TAGAGAAAAA CGTCTTCACA 
ACTTTATAAT ATACTCAGAG GAGGTTCATG ATCGGTATGA ACATAACCGG 
AGACTTAGGA ATCCGGCGAC AACCGCTGTC CAACAAGCCA TTCACGGCCT 
CGCCTACACC ATCTACGGGA AACCCGATGT TCGGCGGCTC ATGTTTGAGG 
TTTTCGACTT CGAACAAATC CAACCTAAAG CTGTCTGAAA ATCGAAGCTG 
TCTCTCTCAT TTGTCTAATG TCTTTTAGTA TACTACTGGG TTTGATTTAT 
GTAGTTAAAT GCTTAATTAC CTTTGGTGAA AAGTTGAAAA CTTTAAACTA 
ACAA

Gene models with high sequence identity

AT4G37510.1 [+] show detail - Ribonuclease III family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
FPrintScan	Ribulose bisphosphate carboxylase, small chain	2.6e-75
superfamily	Ribonuclease III	6.5e-16
superfamily	Ribulose bisphosphate carboxylase, small chain	5.5e-54
Gene3D	Ribulose bisphosphate carboxylase, small chain	6.5e-56
HMMPfam	Ribonuclease III	1.6e-05
HMMPfam	Ribulose bisphosphate carboxylase, small chain	6.7e-42
HMMPfam	RbcS	2.6e-19

See the detailed result >

AT4G37510.1

Model type: Protein coding
Short Description: Ribonuclease III family protein
Computational Description: Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48121.2); Has 794 Blast hits to 789 proteins in 319 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 39; Plants - 42; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Link: InterPro Scan - TAIR