F23908

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23908

Determination of introduced cDNA(s)

RAFL05-14-I08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-I08 - Resource: pda02597

full reading [+] show sequence

TGAACAACAA CAAAGCAAAA ACACTCCCAA ACCAAAAAAA GAAGAAGAAG 
AAGCTAAATT CGAATCTCTC TCTTTTTTGA AATATGGCTT TTTCCAAATC 
TCTAGTGTTT GTTCTTCTCG CTGCTCTTTT GATTTCTTCC GCAGTGGCTC 
AATCTCCGGC TCCAGCTCCA TCTAACGTCG GAGGTAGACG GATCTCACCG 
GCTCCTTCAC CTAAGAAGAT GACTGCTCCT GCTCCTGCAC CTGAAGTTTC 
TCCTTCTCCT TCTCCGGCAG CCGCATTGAC TCCAGAATCC TCTGCTTCAC 
CACCATCGCC GCCTCTAGCT GATTCTCCTA CCGCTGACTC CACGGCTTTG 
TCTCCATCTG CGATCTCCGA TTCTCCGACT GAAGCTCCTG GTCCTGCTCA 
GGGCGGCGCC GTTTCGAACA AATTCGCCAG TTTCGGATCT GTGGCGGTTA 
TGTTAACTGC TGCCGTTTTG GTTATCTAGG TTGTTCCGAT CAATGAAGCT 
TCTTTGATTT TATTTATTTA TTTTAGATAT ATTAGAGTTT TGTGAGAGAG 
ATGATGATTC ATTATTTTTC TCTTCTTTCT ATTATTTTCT TTGAATATTT 
TTCTTTCTTC GGCTGATCCT ATGCGCGTTT GTATCTATCC AATATTTATC 
TATCTATATG ATTTATCAGA TTTTCC

Gene models with high sequence identity

AT5G64310.1 [+] show detail - arabinogalactan protein 1
E-value: 0; Score: 99.85

InterPro Scan Digest

See the detailed result >

AT5G64310.1

Model type: Protein coding
Short Description: arabinogalactan protein 1
Curator Summary: Encodes arabinogalactan-protein (AGP1).
Computational Description: arabinogalactan protein 1 (AGP1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR