F24201

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24201

Determination of introduced cDNA(s)

  • RAFL06-14-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-14-C19 - Resource: pda03188

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-14-C19 - full reading 
    AAGTCAGTAA GTAAACGAGC AAAAGAAGAA GAGAAACAAC AAGAAGTAGT 
    AATGGCTTCC TCTATGCTCT CCTCCGCCGC TGTGGTTACA TCCCCGGCTC 
    AGGCCACCAT GGTCGCTCCA TTCACCGGCT TGAAGTCATC CGCTGCATTC 
    CCGGTCACCC GCAAGACCAA CAAGGACATC ACTTCCATCG CAAGCAACGG 
    GGGAAGAGTT AGCTGCATGA AGGTGTGGCC ACCAATTGGA AAGAAGAAGT 
    TTGAGACTCT ATCTTACCTC CCTGACCTTA GTGACGTCGA ATTGGCTAAG 
    GAAGTTGACT ACCTTCTCCG CAACAAGTGG ATTCCTTGTG TTGAATTCGA 
    GTTAGAGCAC GGATTTGTGT ACCGTGAGCA CGGAAACACT CCCGGATACT 
    ACGATGGACG GTACTGGACA ATGTGGAAGC TTCCATTGTT CGGATGCACC 
    GACTCCGCTC AAGTGTTGAA GGAAGTTGAA GAATGCAAGA AGGAGTACCC 
    GGGCGCCTTC ATTAGGATCA TCGGATTCGA CAACACCCGT CAAGTCCAAT 
    GCATCAGTTT CATTGCCTAC AAGCCCCCAA GCTTCACCGA AGCTTAATTT 
    CTTTTCTAAA ACATTCTTAT GAATTATCTC TGCTCATTTC ATTTCCTATT 
    GTCTGTGTTC TTTTTCTCTT TATGAGACAA TTTCTATCGG ATTGTCAAAT 
    GTCTGATTTA TGAATATGTA ATTTATAT

    Gene models with high sequence identity

    1. AT5G38410.1 [+] show detail - Ribulose bisphosphate carboxylase (small chain) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribulose bisphosphate carboxylase, small chain 5.5e-53
    HMMPfam Ribulose bisphosphate carboxylase, small chain 7e-41
    HMMPfam RbcS 3.4e-21
    Gene3D Ribulose bisphosphate carboxylase, small chain 2e-54
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 1.3e-75

    See the detailed result >

    AT5G38410.1

    Model type
    Protein coding
    Short Description
    Ribulose bisphosphate carboxylase (small chain) family protein
    Computational Description
    Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR