F24704

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24704

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24704

Determination of introduced cDNA(s)

  • RAFL09-30-H24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-30-H24 - Resource: pda08197

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-30-H24 - full reading 
    GCTCAGCCCT AAAAGCTTAC TCCTTTCAAC TTTCTGGAGG CCTTCTCGTA 
    GCCTAGCGTC ATAGATGGAT TTGATGGAGA AGAACTTGGA GTTAGTGGAG 
    ATTCAGAAAC TAGAAGGCCA CACCGATCGT GTTTGGAGCG TAGCTTGGAA 
    CCCCGTTTCT TCTCACGCCG ACGGTGTTTC ACCGATTCTT GCTTCTTGCA 
    GTGGCGATAA CACTGTTCGA ATCTGGGAAC AAAGCTCTCT CTCTCGCTCC 
    TGGACTTGCA AGACAGTTTT GGAAGAGACG CATACAAGAA CTGTGAGGTC 
    GTGCGCTTGG TCACCCTCAG GACAGTTATT GGCCACTGCA AGTTTTGATG 
    GTACCACTGG CATTTGGAAG AATTACGGTT CTGAGTTTGA GTGTATTTCC 
    ACTTTGGAGG GACATGAAAA CGAAGTCAAA AGTGTATCAT GGAATGCATC 
    TGGTTCATGC CTTGCAACAT GTAGTAGAGA TAAGTCTGTT TGGATTTGGG 
    AAGTGCTTGA AGGGAATGAA TATGACTGTG CTGCGGTATT AACTGGGCAT 
    ACACAAGATG TGAAGATGGT TCAGTGGCAT CCCACCATGG ATGTTTTATT 
    TTCTTGCAGT TATGATAACA CCATCAAGGT TTGGTGGTCT GAAGATGATG 
    ATGGTGAGTA TCAATGTGTC CAAACCTTAG GTGAATCTAA CAACGGTCAC 
    TCTTCAACGG TATGGTCCAT CTCATTTAAC GCTGCAGGGG ACAAGATGGT 
    CACTTGTAGT GATGATCTAA CCTTGAAGAT ATGGGGGACA GATATTGCCA 
    AGATGCAGTC TGGTGAAGAA TATGCACCTT GGATTCATCT TTGTACTCTC 
    TCTGGCTATC ATGACCGTAC CATATACTCA GCTCACTGGT CAAGGGACGA 
    CATTATTGCC AGTGGAGCAG GCGATAATGC TATACGGTTG TTTGTGGACA 
    GCAAACATGA CTCTGTTGAT GGACCTTCAT ATAATCTTTT GCTGAAGAAG 
    AATAAAGCAC ATGAAAATGA TGTAAACTCT GTCCAATGGT CACCCGGTGA 
    GGGGAACCGG TTGCTTGCGT CGGCTAGTGA TGATGGGATG GTCAAGATTT 
    GGCAGCTTGC AACTAAACCG TGACTGCTGT TGGTTTGGAT AGGTTCTGAA 
    ACTCCTGTGT TGTTTTACTT TTTCTGAGGT CTATCTGTAA ACAACATAAC 
    ATTTTAGGTA GAAGAGAACT CTATACTATT TTGTCATACA AGATTAGCTC 
    CATGATGTTT CATACGATTT CTGTTTTAC

    Gene models with high sequence identity

    1. AT2G26060.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    FPrintScan G-protein beta WD-40 repeat, region 1.79999951654677e-06
    FPrintScan G-protein beta WD-40 repeat, region 1.79999951654677e-06
    FPrintScan G-protein beta WD-40 repeat, region 1.79999951654677e-06
    superfamily WD40 repeat-like-containing domain 3.8e-67
    HMMSmart WD40 repeat 1.20000117458134e-09
    HMMSmart WD40 repeat 2.19999900980708e-08
    HMMSmart WD40 repeat 1.20000117458134e-10
    HMMSmart WD40 repeat 3.39999972437717e-07
    HMMSmart WD40 repeat 1.19999985703101e-06
    HMMSmart WD40 repeat 0.269999998300297
    HMMSmart WD40 repeat 5.20000089003336e-07
    HMMPanther PTHR19920 2.1999990098093e-118
    Gene3D WD40/YVTN repeat-like-containing domain 1.19999063421921e-70
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 5.40000000000001e-09
    HMMPfam WD40 repeat, subgroup 1.7e-09
    HMMPfam WD40 repeat, subgroup 1.1e-08
    HMMPfam WD40 repeat, subgroup 2.6e-07
    HMMPfam WD40 repeat, subgroup 0.00023
    HMMPfam WD40 repeat, subgroup 9.1
    HMMPfam WD40 repeat, subgroup 5.39999999999999e-07

    See the detailed result >

    AT2G26060.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    embryo defective 1345 (emb1345); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G32990.1); Has 69948 Blast hits to 29854 proteins in 810 species: Archae - 58; Bacteria - 8000; Metazoa - 27493; Fungi - 15911; Plants - 9301; Viruses - 0; Other Eukaryotes - 9185 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR