F24711

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24711

Determination of introduced cDNA(s)

RAFL09-86-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-C12 - Resource: pda06883

full reading [+] show sequence

CCGTCTCTTT CACTTACACT TTCACTTCAC GTTTGCGACT GTGTCGTCGT 
CAAGCTCCGA ATCTCATCGG CGTTTCATCA TAATTATCTG TCCATCTATT 
CACCGTACGA CTCCGTTTTA GAAATCTGTA GATGTCAATT TGAGAGAAAA 
GACTGTCTTC ATTACAACAC ATTTGGGACA ACAAGGATCA CTCATGGCAG 
TGGTGGATGT TCATCGTTTC GCTGAGTCAA TCACTTGCCA TGCTTGGAGT 
CCTGATCTCT CCATGGTTGC TCTCTGTCCT AACAACACTG AAGTTCATAT 
CTATAAATCA TTGTCTCAAG ACCACTGGGA GAGGTTACAT GTCCTCCAAA 
AGCATGACCA AATTGTTTCT GGAATAGATT GGAGCTCAAA GTCCAACAAA 
ATCGTCACTG TTTCTCATGA CAGGAACTCG TACGTCTGGA GCCTGGAAGG 
AGCTGAATGG GTACCAACTC TCGTTATTCT TAGACTAAAT CGTGCTGCAC 
TTTGTGTCCA ATGGAGCCCC AAAGAGAACA AGTTTGCTGT TGGAAGTGGT 
GCTAAAACTG TTTGTATTTG CTATTATGAG CAAGAGAATA ACTGGTGGGT 
CAGTAAGCTA ATCCGGAAAA GGCACGAATC TTCAGTCACA TCTGTTGCTT 
GGCATCCTAA TAATGTTCTT CTGGCAACGA CATCAACAGA TGGAAAATGT 
CGGGTATTTT CAACATTCAT CAAAGGAGTT GACACAAAGG ATTCAAAAGC 
AGGCTCACCA GCGGAAACGA AATTTGGGGA GCAAATTCTT CAGCTTGATC 
TCTCATATTC TTGGGCATTT GGTGTTAAAT GGTCTCCAAG TGGAAACACC 
TTAGCATATG TAGGTCATAG CTCCATGATT TACTTTGTTG ATGATGTTGG 
CCCTTCTCCT TTAGCCCAAA GCGTTGCATT CCGAGATTTG CCTCTTCGTG 
ATGTCCTGTT TATTTCTGAG AAAATGGTGA TAGGGGTTGG ATATGACAGC 
AACCCGATGG TATTTGCTGC AGATGATACT GGAATATGGA GCTTCATAAG 
ATACATTGGA GAGAAGAAAG CGGCATCTTC AGGTTCCAGT TACAGTTCGC 
AGTTTTCCGA AGCGTTTGGA AAATTCTACG GTAGTCAATC AAAGTCTACA 
ACAGCCAACG ATGCTTCTGA TTCACGTGGA GGCGTTCATG ATAACAGCAT 
AACTTCCATT GTGCCTCTGG GCAAAGGAGG GAGTCCTAAA GTTATGCGAT 
TCAGCACTTC AGGATTGGAT GGCAAAATAG CCATATGGGA TCTAGAGAAC 
ATGCAACAAG AACTTGGCAA TCAGTTTTAA TAAAATCTGG ATCAGTAGTC 
AGCTTACTTA ATTTGTATAT CAGATTTTGT TTCGACTAGC CTTTTCACCT 
TTTTCCAATT TCGTAATTGT CACACTTGGT AAACTGCATA ATAAAGGCCA 
TGTTTTCCTG GTTTGTGTAA GGGCAGGTGT TATTAAGTTT TGAGC

Gene models with high sequence identity

AT2G31300.1 [+] show detail - actin-related protein C1B
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMSmart	WD40 repeat	180
HMMSmart	WD40 repeat	0.00036
HMMSmart	WD40 repeat	7.9
HMMSmart	WD40 repeat	1.5e-05
HMMSmart	WD40 repeat	7
HMMSmart	WD40 repeat	48
ProfileScan	WD40 repeat 2	10.943
ProfileScan	WD40 repeat 2	10.041
ProfileScan	WD40-repeat-containing domain	12.816
HMMPanther	ARP2/3 COMPLEX SUBUNIT	0
HMMPanther	ARP2/3 COMPLEX SUBUNIT 1	0
Gene3D	WD40/YVTN repeat-like-containing domain	2.1e-70
HMMPfam	WD40 repeat, subgroup	6.2e-05
HMMPfam	WD40 repeat, subgroup	0.52
HMMPfam	WD40 repeat, subgroup	6.7e-08
superfamily	WD40 repeat-like-containing domain	4.9e-55

See the detailed result >

AT2G31300.1

Model type: Protein coding
Short Description: actin-related protein C1B
Curator Summary: putative ARP2/3 protein complex subunit p41
Computational Description: actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Link: InterPro Scan - TAIR