F24937

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24937

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24937

Determination of introduced cDNA(s)

RAFL06-15-H16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-H16 - Resource: pda03207

full reading [+] show sequence

GAAGCCTACC AACCACATGC ACACTAATTC TACTCGCCAA ATAAAGTGAA 
AAGAGATGGC TGATGGAGGA AAGGTGGTCT GCGTAACCGG AGCTTCCGGT 
TACATAGCGT CTTGGATCGT CAAGCTTTTG CTCTTCCGTG GCTACACCAT 
CAATGCCACC GTTCGAGACC CAAGTTTGAA TTCCTTCTTC TCTCTTTCTT 
TTTTCCTCCT GATTTCTCCT TAGTAATATC GAAGACAATC CCTCTTTGTC 
ACTCACTTGA ATAATCAAAG TTATCTAGAT GCTTTTTAGA GATACAAGTG 
ACAATTCAGA GAAAATTAAG AATATTAGCT AAGCAAATCC AACTATCCAA 
GAGAAAGTAT TTTGTAGGTA CTTGGTACGA TTAAGAGTTG GTTCTATGGC 
CAAAAAAGTA TGTTTTTGGT TTCATTCTCT AAAAGGAAGT ATACATTAAC 
AAACGAAAAT TCAAATGAAC TCACATGTAG TGGATATAGA TGGGGTGAAA 
CTTTGGTCGA TGTTTAGAGC CAAAAACTAA ATAAGCATTT ATGTTATCTT 
GAAGTGCACT TTGACATATA TGTGTTTTTC TCCAGAAGAT CGAAAGAAAA 
CAGATCACCT TCTAGCACTT GACGGCGCAA AAGAAAGACT CAAATTATTC 
AAAGCAGATC TTCTAGATGA AGGTTCTTTT GAGCTCGCAA TTGATGGATG 
CGAGACTGTC TTCCACACTG CTTCACCGGT TGCAATCACT GTCAAGACTG 
ATCCTCAGGT TGAGCTGATC AATCCAGCCG TCAATGGTAC TATTAACGTC 
CTAAGAACTT GCACTAAAGT GTCTTCTGTC AAGAGGGTCA TCTTAACATC 
GTCCATGGCC GCAGTTCTTG CGCCTGAGAC CAAGTTGGGA CCAAACGATT 
TAGTAGACGA AACCTTCTTC ACTAATCCAA GTTTTGCTGA GGAGAGAAAG 
CAATGGTATG TACTTTCTAA GACTTTGGCC GAAGATGCAG CATGGCGATT 
TGCCAAGGAC AATGAGATCG ACTTGATCGT ACTGAATCCG GGACTTGTGA 
CTGGACCAAT CTTGCAGCCA ACTCTTAATT TCTCGGTAGC TGTGATTGTG 
GAACTTATGA AAGGCAAGAA TCCTTTTAAT ACTACACATC ATAGGTTCGT 
GGACGTGAGA GATGTTGCTC TAGCTCATGT AAAGGCACTC GAGACTCCTT 
CAGCCAATGG CAGATATATC ATTGATGGTC CGGTTGTGAC AATAAAAGAC 
ATTGAAAACG TTTTGCGCGA ATTCTTTCCT GATTTGTGTA TTGCTGATAG 
GAATGAAGAC ATTACTGAGC TGAATTCAGT GACTTTCAAT GTGTGTCTGG 
ATAAAGTGAA AAGTTTGGGA ATAATTGAGT TCACTCCTAC AGAAACAAGC 
CTTAGAGACA CTGTTCTTAG TCTCAAGGAG AAATGTCTTG TGTGATCTTC 
TTTATTGTTT TTGGTTACTT GTTATTCCTT GCAGGTCTAT ATACATTTCA 
CAAATTATAA TTAAGTCTTA CATGTTATTT AAG

Gene models with high sequence identity

AT1G09500.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.4e-10
superfamily	NAD(P)-binding domain	2.5e-36
HMMPanther	CINNAMOYL-COA REDUCTASE	7.3e-21
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	7.3e-21
HMMPanther	CINNAMOYL-COA REDUCTASE	3.1e-133
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.1e-133
HMMPfam	NmrA	5.3e-05
HMMPfam	NAD-dependent epimerase/dehydratase	7.7e-18
Gene3D	NAD(P)-binding domain	2.9e-05
Gene3D	NAD(P)-binding domain	1.4e-22

See the detailed result >

AT1G09500.2

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1); Has 5984 Blast hits to 5972 proteins in 1034 species: Archae - 45; Bacteria - 1406; Metazoa - 103; Fungi - 845; Plants - 2285; Viruses - 7; Other Eukaryotes - 1293 (source: NCBI BLink).
Link: InterPro Scan - TAIR