F25140

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25140

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25140

Determination of introduced cDNA(s)

  • RAFL05-01-D12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-D12 - Resource: pda00675

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-D12 - full reading 
    GAAGCGGCTT GGGTAGCAGC TTGCAAAATC GAAGCATCAG TGATGCTTGT 
    ACCGCCTGAA TACACTTACC TTGTTGGACC GATCTCATTC TCTGGTCCTT 
    ATTGTCAAGC TAACATTGTG TTCCAGCTTG ATGGTACGAT TATAGCTCCA 
    ACGGATTCAA AGACATGGGG AAAAGGGTTA ATGTGGTGGA TTGATTTTAC 
    AAAGCTGAAA GGAATTAAAG TACAAGGGAA AGGTGTTATT GATGGAAGAG 
    GCTCTGGTTG GTGGCAACAA GATTCTCCTT TCATTGATAG TGATACCAAA 
    CTCATCGTCC CTTTGAACAA TTCTGCTAAC CAAAACCCTC CTATGCCGAT 
    CAGAAGTGAG CTTGATGAGA GAATGCCAAG CATTAAACCA ACGGCATTAA 
    GATTCTCTGG GAGTTTTGGT GTGGAAGTGA CGGGTATAAC GATACAAAAC 
    AGTCCTCAGT GTCACCTCAA ATTCGACGAC TGCGTAGGGG TTGTGGTGCA 
    TGACATAGCC GTTTCTTCAC CTGGTGACAG TCCAAACACT GATGGAATTC 
    ACCTCCAGAA CACCAAAGAT GTCCTCATTC ACAGCACTAC TCTCGCTTGC 
    GGAGATGACT GTATCTCGAT CCAAACGGGT TGCTCGAACG TGTTTGTGCA 
    CAATGTGAAC TGTGGACCGG GTCACGGGAT CAGCATTGGT AGTCTCGGCA 
    AAGAGGGTAC AAAAGCCTGC GTCTCGAACA TAACAGTACG AGACGTAGCT 
    ATGCACAACA CAATGACAGG TGTCCGAATC AAGACATGGC AAGGAGGAGT 
    AGGATCAGTG AAAGGGATAA TCTTCTCAAA CATTCAGCTC AACCAAGTAC 
    AAATTCCAAT AACGATAAAC CAATTCTACT GTGACCATAG CAAATGCAAG 
    AACCAAACAT CAGCAGTAGC AGTGGAAGGA GTGACTTACG AGAGGATAAA 
    AGGAACTTAT ACCGTGAAAC CGGTGCATTT CGCTTGTAGC GATAACTTCC 
    CGTGTGTAGA TGTGCAGTTA TCGTCGATAG AGCTTAAACC GGTTCAAGAA 
    AAGTATCGAA TGTATGATGC TTATTGCTGG CAGACATTTG GTGAGCTCAA 
    CACTCCTACT CTTCCTCCCA TTGATTGTTT GAAGATTGGG AAGCCCCCGA 
    GAAACAAAGT TCAGTCCGAT CACGATGTGT GTTAACGGAT TTTTCGCAAG 
    TAAAAAGATG TAGATTCATG TATATCATCT TTCTTTAGCC TATAAAACCT 
    ACTTCATACG AATTTACGGT TTAGATACC

    Gene models with high sequence identity

    1. AT1G10640.1 [+] show detail - Pectin lyase-like superfamily protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 28 0
    Gene3D Pectin lyase fold 5.5e-106
    superfamily Pectin lyase fold/virulence factor 8e-90
    HMMPfam Glycoside hydrolase, family 28 2.2e-11
    HMMPfam Glycoside hydrolase, family 28 8.1e-70
    HMMSmart Parallel beta-helix repeat 380
    HMMSmart Parallel beta-helix repeat 2200
    HMMSmart Parallel beta-helix repeat 6800
    HMMSmart Parallel beta-helix repeat 29

    See the detailed result >

    AT1G10640.1

    Model type
    Protein coding
    Short Description
    Pectin lyase-like superfamily protein
    Computational Description
    Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR