F25845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25845

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25845

Determination of introduced cDNA(s)

  • RAFL16-12-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-12-M11 - Resource: pda19417

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-12-M11 - full reading 
    GAGAGGTCAG CGATGGTAGA CTCACCGTCG AAGGTTTCTC TGTAGCTTCT 
    CGAGCTTTTG CCGATAAGTG GAAGATACAT AACCAATCGT TCCCTCCATG 
    GTCTTGGGTT CCTCTGATCA ATCGAACTCT ACTTGTTTCA AAGAAGCAGG 
    AGGAAGGTTA CTTGTCGCTG GAGAAGATCA TAATTCTCAG TTCACTTGAG 
    GAGGAAATTC CAGAGGATGA ATCTCTAAAT GTAGCTACTG ATTGCTTGGA 
    AAAAGAAGAA ACAGTTGATC ACACGATTTT GGTCCCAACC ATGGAAAATG 
    AAGCACACTA CTATGATTTC CATATAGTTT ACAGTGCATC ATACAAGGTT 
    CCTGTGCTAT ATTTTCGCGG ATACTGCAGC GGTGGAGAAC CTCTTGCTTT 
    GGATGTCATA AAAAAAGATG TACCCTCATG CTCTGTTAGT CTTTTGCTGG 
    AATCTAAGTG GACTTTTATA ACTCAAGAGG AGCATCCATA TTTGAACAGG 
    CCATGGTTCA AGCTACATCC CTGTGGGACT GAGGACTGGA TCAAGCTGCT 
    TTCCCAAAGT AGCAGCTCTT CTGGATGTCA GATGCCAATT GTGTTGTACT 
    TGGTTTCATG GTTCTCTGTT GTCGGGCAGG TGGTTGGTCT TAGGATCCCT 
    CTTGAGATGC TGAATTAGTA GCCATCTTCT GTTATCAAAA TATATAATGT 
    ATCAGTGGCT CCAAACCCTC GGCAACAACT TTTAAAGTAA CATGCAGCGG 
    AACTAATCAA AAAGATAACG TAGATAGACT TCCAGTAGTG TACGAAGATG 
    TTCGGATAGG TTTGGTGGTG GACATGGGTT CCATGGAAGG CAAGCTTGTG 
    ACAACTTCGA TTTCGATGGC GCTTTCTGAT TTCTATCATG TCAACAATGG 
    CTATAGAACA AGAGTCTCTG TCTTATCCAG AGACTCTCAT GGTGACCCTC 
    TCCAAGCTCT CGCTGCAGCC ATGGACCTCC TGCAAACTGA ACAAGTGGAA 
    GCACTTGTTG GTGGACAATC GTTGCTTGAA GCAAAAAATT TAGCAGAGCT 
    TGGGGAGAAA ACTAAAGTTC CAGTGATTTC TTCTTTCCAA GTTCCTAGCT 
    CGTTGAGCTT GGCCAAATAT AATTACTTTA TTCAAGCTAC TCATGATACA 
    TCCTCTGAAG CAAAGGGAAT TGCAGCTCTG TTCAGCAATT TTGATTGGAG 
    AACCGCTGTT CTTATCTACG AGGATGATGA TGACTGGAGA GAGAGTATAC 
    AACCTTTGGT TGGACATTTC CAACAGAACG CCATTCACAT TGAGTACAAG 
    GCGGAATTTT CTGTCTCATC TAATGAGGAA TGTATCATGA AGCAGCTAAG 
    AAAGTTTAAG GCCTCGGGGA TAAGGATTTT TGTTGCGCAC ATTTCTGAAC 
    GAATTGCAAA TCGTCTCTTT CCATGTGCTC GGAGGTTAGG AATGATGGAG 
    GAAGGATATG CTTGGATCCT CACAGCGAGA AGCATGAATA ATTTTCAAGA 
    CACAAATTAT TTAGCAAAAG AGGAAATGGA AGGTGTGATT GGTTTCAAGT 
    CTTATATTCC GTTGACTGAG GAGCTTCACA ACTTTACTTT GAGATGGAAG 
    AGATCTTTGC GACTCGAAGA AGTAGTTACA AGGATGAGCG TTTGTAGCAT 
    ATGGGCTCAC GATATAGCTT GGAGTCTTGC AAGAGCAGCA GAAGTTGCAA 
    AGTTACCAGG TTTGTCAGTA TATGACCTGC TTGAGGCTAT TCCAGAGAGT 
    GCTAAGCATA AAGGTTTGAG TGGTGACATC AAATTCATCG ATAAGAAGTT 
    TATCTCAGAC AAGTTTGAGA TTGTGAATAT GATAGGGAGA GGTGAGAGAA 
    GTGTAGGACT TTGGAATTCT GGTAGTTTCA TCAGCAATAG AAGAAGACGT 
    TTGTCTTCTA CCAAAGCACT TGAGACAATC ATCTGGCCTG GAGGGTCTAC 
    AAGAATTCCG AAAATCCGTT CGTTGAAAGA GAAGAGGCAT GGTAAAAAGA 
    AGAAGCTGAG AGTTTTAGTA CCAGCAGGAA ACATAACTCC GCAAATACTG 
    GAAGTGAAAA CAGATTTTAA AACTGGAGTC ACAGCTGCTA CAGGATACTG 
    TATTGACGTT TTTGAGACAT CAATCCTACC TTTCAATTAT GAAGTGGAGT 
    ACATACCTTG GCCTGGTGCA ATTAACTACA AGAACTACAA CGATCTTGTG 
    TACACACTGT ATAGCCAGAA AGACAAGTAC GATGCAGCTG TTGGGGATAT 
    CACGATTACT GATAACAGAT CTTTATATGT AGATTTTACA TTACCTTTCA 
    CTGATATGGG ACTCGCAGTT GTTACTGCCA AAGACAAAAG CATGTGGATT 
    ATCTTTAAGC CTTTGACACT TAGTCTTTGG CTAACAATTG CAAGTTTCTT 
    TATCTTGACG GGGGCTATAG TTTGGTTGAT AGAGCGGCAT GATAACGCTG 
    ACTTCCAAGG CTCTTGTTTC CAACAGATTG GAACATTGCT ATGTTTTGGG 
    TTCTCGACCC TTGTCTTTGC CCATCGGGAG AGGCTGCAAC ATAATATGTC 
    AAGATTTGTA GTTATTGTTT GGATATTTGC AGTGCTTATA TTGACTTCAA 
    ATTACACTGC AACGTTGACA TCAGTGATGA CGGTTCAACA GATACGCGGG 
    TTGAAATCAA ACGAAAACAT TGGCTTCTTT TCTGCCTCTA TTGCAGCAAA 
    TGTGGTTAAT GATAATCCTA CGTTCCAAGG ACCGAGATAC AAGGGATTAA 
    AGACAGCTGA CGATTTTACA AATGCTTTAA GGAATGGAAC TATCTCGTTT 
    ATCGTCGATG AAGTTCCATA TGTAAAGCTC TTTGTTGCAA AGCACCCTTC 
    AGAATTCGTC ATTGTCGAAA CCGAAAGCGT AACCAACGGC TTTGGATTTG 
    CTTTCCAGAA AGGTTCTCCT TTGGTTCAAA AGGTGTCAAG AGAAATCGAA 
    AAGCTAAGGA GAACAGAGAA GCTAAAAGCC ATAGAGAATT GGTGGTTCCA 
    GAGACAAACG ACGTCAGCCA CAAGCGAGGA TACGTTCCAT CCTCTCACTG 
    TATACACATT TCGCGGTTTG TTTATGATCA CAGGAGTTTC TTTTGCGTTT 
    GCTCTCATCG TCTATCTAAT CCCCTGGAAC CGAGAACAAA GGCAAGTTGT 
    GCTTAAACAT TTCCACCGTT ATGTTAGTCA TCGATTTGCA AGAGAAATTC 
    GTCCTTCTCC CACCACACCA AACAGGCAAA ATGAGAATTC AGTCATCTGA 
    AGCCTGACAT CTTCTTATCA CTTACCTCAG AAATGCAATT CTCATATTTC 
    TTCTCCTTTT GTACATCGTT ATATGCTTAT ATGTGTCAAT CCCATCCATA 
    GCTTGAGACA ATTTTTTATC TTTAACCTTC GAATTGGGTA CTTAAAAGGG 
    AATGTATCCT ATATGATTTG TCTTATTAGA TTGAAAAATC TCAAGTTAAT 
    CATTAATTTT AAGAGAAAAT CTTATTAGTG AGAAAA

    Gene models with high sequence identity

    1. AT3G07520.1 [+] show detail - glutamate receptor 1.4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Ionotropic glutamate-like receptor, plant 0
    superfamily Periplasmic binding protein-like I 7.3e-54
    superfamily Periplasmic binding protein-like II 8.2e-37
    HMMSmart Ionotropic glutamate receptor 1.3e-27
    HMMPanther GLUTAMATE RECEPTOR 1 PLANT 0
    HMMPanther Glutamate receptor-related 0
    Gene3D no description 9.8e-09
    Gene3D no description 9.7e-15
    HMMPfam Extracellular ligand-binding receptor 2.6e-39
    HMMPfam Ionotropic glutamate receptor 3.5e-25
    HMMPfam Extracellular solute-binding protein, family 3 7.7e-19
    HMMPfam Autophagy-related protein 3 1e-21

    See the detailed result >

    AT3G07520.1

    Model type
    Protein coding
    Short Description
    glutamate receptor 1.4
    Curator Summary
    member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.
    Computational Description
    glutamate receptor 1.4 (GLR1.4); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: Glutamate receptor family protein (TAIR:AT5G48400.2); Has 3364 Blast hits to 3306 proteins in 339 species: Archae - 5; Bacteria - 450; Metazoa - 2203; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR