F26105

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26105

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26105

Determination of introduced cDNA(s)

RAFL07-15-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-15-K03 - Resource: pda07869

full reading [+] show sequence

AAGCTATTTC ACCTACTTCA TCACTCATCA CCAGCTTCGC ATCTTCTTCT 
CCGGCTTGAT CTTCTCTCGT TTCTAGATCT CCGACGATCG GAATATCAAA 
TCCGATCGAT TAATTCTGTC AATCACACAA AAACCGAAAA CCAAAAAAAA 
AACCATGGCG TTTGAGAAGA TCAAGGTGGC AAATCCCATC GTCGAGATGG 
ATGGTGATGA AATGACCAGG GTTATTTGGA AGTCTATCAA GGATAAGCTT 
ATTACTCCTT TTGTGGAGTT GGATATCAAG TACTTCGACC TTGGTCTTCC 
TCACCGTGAT GCTACGGATG ACAAAGTTAC TATTGAAAGT GCTGAAGCTA 
CTAAGAAGTA CAATGTGGCG ATCAAGTGTG CCACCATCAC TCCAGATGAA 
GGCCGTGTCA CGGAATTTGG CTTGAAGCAG ATGTGGAGAA GTCCAAATGG 
GACCATCAGG AATATCCTGA ATGGAACTGT ATTTAGAGAG CCAATTATCT 
GCAAAAATGT TCCCAAGCTT GTCCCAGGCT GGACAAAGCC CATCTGCATT 
GGAAGGCATG CTTTTGGTGA TCAGTACCGT GCCACTGATG CTGTAATCAA 
GGGACCAGGA AAACTGACTA TGACCTTTGA GGGAAAAGAT GGGAAAACTG 
AAACCGAAGT CTTTACATTT ACTGGTGAAG GTGGTGTTGC TATGGCAATG 
TACAACACTG ATGAGTCCAT CCGTGCTTTT GCTGATGCAT CGATGAACAC 
TGCTTATGAG AAAAAGTGGC CACTTTACCT TAGCACAAAG AATACCATTC 
TTAAGAAATA CGATGGCAGA TTCAAAGACA TCTTCCAAGA AGTCTATGAA 
GCCAGCTGGA AGTCGAAGTA TGATGCTGCT GGAATCTGGT ATGAACACCG 
TCTCATTGAT GATATGGTGG CCTACGCTCT TAAGAGTGAG GGAGGCTATG 
TTTGGGCATG CAAAAACTAT GATGGTGATG TCCAAAGTGA TTTCTTGGCA 
CAAGGATTCG GGTCACTTGG ATTGATGACA TCTGTTCTGG TCTGCCCAGA 
TGGAAAGACG ATTGAAGCTG AAGCGGCCCA TGGAACTGTC ACCCGTCACT 
TCAGGGTTCA TCAGAAAGGT GGTGAGACCA GCACAAACAG CATAGCCTCT 
ATTTTTGCTT GGACTCGTGG ACTTGCACAC AGGGCTAAGT TAGATGACAA 
CGCAAAACTC TTGGATTTCA CTGAGAAGCT GGAAGCCGCT TGTGTTGGGA 
CAGTGGAGTC AGGGAAAATG ACCAAAGATC TTGCACTCAT CATTCACGGC 
TCAAAGCTTT CGAGGGACAC GTACCTGAAC ACAGAGGATT TCATCGATGC 
AGTCGCTGCT GAGCTCAAAG AAAGACTCAA TGCTTAAGAA ACTGAAGAAA 
TTGGGTAAAA TTCGAACGTC TCAGTTCCTA AGTGTCTTAT CTGGTTGGTG 
GGGTTGGTTG GGATCGGGAG GAATAAACTT TTGTGGAGAG GAGTGTTGAG 
AACGATTTGT TTCCTCTCTT ATAATATTTC CAAAATATTG CGACATTTTT 
T

Gene models with high sequence identity

AT1G65930.1 [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Isocitrate/isopropylmalate dehydrogenase	1.1e-92
HMMPanther	Isocitrate dehydrogenase NADP-dependent, eukaryotic	0
HMMTigr	Isocitrate dehydrogenase NADP-dependent, eukaryotic	4.3e-244
PatternScan	Isocitrate/isopropylmalate dehydrogenase, conserved site	0
HMMPIR	Isocitrate dehydrogenase NADP-dependent, eukaryotic	1.5e-284
Gene3D	Isocitrate/isopropylmalate dehydrogenase	2e-146
superfamily	Isocitrate/Isopropylmalate dehydrogenase-like	3.2e-154

See the detailed result >

AT1G65930.1

Model type: Protein coding
Short Description: cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary: Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description: cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link: InterPro Scan - TAIR