F26407

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26407

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26407

Determination of introduced cDNA(s)

RAFL06-83-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-A09 - Resource: pda17257

full reading [+] show sequence

GCTCAGTCTT TCTTCTTCTT CTTCGTTGTG ATAGGTCAGG TCAGGGAACA 
ACAATGGCTT CTTCTGCAAC AGCACCAAAT TCGCTATCTT TCTTCTCATC 
TTCTCTCTTT TTATCCTCCT CTCACCAAAT CCCTAAAACC TACATTTCCG 
TTTCAAAACT CGGCTCCGGC AGAGTCTCGA AGCCGCTTTC TGTCTCTTCC 
CAGCTAGCGA CTCTACCGAT TCTATCATTC GAAGGAGAGA AGGTCGGAGA 
GACGTATCTA GACCTCAAAG CGGCGCCGGA GGATACCGCG CGTGCCGTTG 
TGCACCGAGC CATCGTGACG GACCTGAATA ACAAGCGGCG AGGTACTGCT 
TCCACACTGA CTCGCGGTGA AGTTCGTGGT GGTGGAATTA AACCTTACTC 
ACAGAAGAAA ACTGGCCACG CGAGGCGTGG ATCTCAGAGA ACACCGTTAC 
GTCCCGGTGG AGGTGTGGTG TTTGGGCCAA GACCTAAGGA TTGGTCAATT 
AAAATCAATA GGAAGGAGAA GAAGCTAGCG ATATCTACGG CGTTATCGAG 
TGCGGCATCT GCGGAAGGTG GTGCGATAGT GGTGGAGGAA TTTGGGGAGA 
AGTTTGAGAA GCCCAAGACT AAAGATTTCT TAGCTGCGAT GCAAAGGTGG 
GGATTGGATC CCAAGGAGAA AGCTATGTTC TTGATGATTG ATGTGGATGA 
GAATGTGGCG AAATCGAGTA GGAACATTGG AACCTTGAGG ATGTTGACGC 
CTAGGACACT GAATCTGTTT GATATTTTGA ACGCTGATAA GCTTGTTCTG 
ACTCCTGCGG CTGTGGAGTT CTTGAATGCG AGGTACGGTG TTGATGCGGT 
GGAGGAAGAA GATGACGATG AAGATGAGAC GGAAGGGTCA GAGGAAGCTT 
AAGAATGAGT AGCACCCGTA GTTCCAATTG CTTCAAGTGT GGCTTAATTA 
TGAGTTTAAT CTTGAGTACA TCTTCTCACT CTCCTTGATG AGGTCTTCTC 
TTTCCTTTTT GTGTCACAAC AAGAGAAATG TGTATTTACT TTTAGAGTTT 
TTCTTAAGAG ATCATCCTCA ATTTCTTGTC ATACTGATTT TGTGTCCAAC 
TCTCAATGAA GGAGTAAGGA GTGAAATTAG ATATCATGAG TAACGTCAAA 
AAAAAAA

Gene models with high sequence identity

AT1G07320.1 [+] show detail - ribosomal protein L4
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Ribosomal protein L4/L1e	3.3e-61
Gene3D	no description	1.5e-29
HMMPanther	Ribosomal protein L4	1.1e-84
HMMPanther	Ribosomal protein L4/L1e, bacterial-type	1.1e-84
HMMPfam	Ribosomal protein L4/L1e	3.5e-53

See the detailed result >

AT1G07320.1

Model type: Protein coding
Short Description: ribosomal protein L4
Curator Summary: encodes a plastid ribosomal protein L4
Computational Description: ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3; Bacteria - 5615; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).
Link: InterPro Scan - TAIR