F26407

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26407

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26407

Determination of introduced cDNA(s)

  • RAFL06-83-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-A09 - Resource: pda17257

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-A09 - full reading
    GCTCAGTCTT TCTTCTTCTT CTTCGTTGTG ATAGGTCAGG TCAGGGAACA 
    ACAATGGCTT CTTCTGCAAC AGCACCAAAT TCGCTATCTT TCTTCTCATC
    TTCTCTCTTT TTATCCTCCT CTCACCAAAT CCCTAAAACC TACATTTCCG
    TTTCAAAACT CGGCTCCGGC AGAGTCTCGA AGCCGCTTTC TGTCTCTTCC
    CAGCTAGCGA CTCTACCGAT TCTATCATTC GAAGGAGAGA AGGTCGGAGA
    GACGTATCTA GACCTCAAAG CGGCGCCGGA GGATACCGCG CGTGCCGTTG
    TGCACCGAGC CATCGTGACG GACCTGAATA ACAAGCGGCG AGGTACTGCT
    TCCACACTGA CTCGCGGTGA AGTTCGTGGT GGTGGAATTA AACCTTACTC
    ACAGAAGAAA ACTGGCCACG CGAGGCGTGG ATCTCAGAGA ACACCGTTAC
    GTCCCGGTGG AGGTGTGGTG TTTGGGCCAA GACCTAAGGA TTGGTCAATT
    AAAATCAATA GGAAGGAGAA GAAGCTAGCG ATATCTACGG CGTTATCGAG
    TGCGGCATCT GCGGAAGGTG GTGCGATAGT GGTGGAGGAA TTTGGGGAGA
    AGTTTGAGAA GCCCAAGACT AAAGATTTCT TAGCTGCGAT GCAAAGGTGG
    GGATTGGATC CCAAGGAGAA AGCTATGTTC TTGATGATTG ATGTGGATGA
    GAATGTGGCG AAATCGAGTA GGAACATTGG AACCTTGAGG ATGTTGACGC
    CTAGGACACT GAATCTGTTT GATATTTTGA ACGCTGATAA GCTTGTTCTG
    ACTCCTGCGG CTGTGGAGTT CTTGAATGCG AGGTACGGTG TTGATGCGGT
    GGAGGAAGAA GATGACGATG AAGATGAGAC GGAAGGGTCA GAGGAAGCTT
    AAGAATGAGT AGCACCCGTA GTTCCAATTG CTTCAAGTGT GGCTTAATTA
    TGAGTTTAAT CTTGAGTACA TCTTCTCACT CTCCTTGATG AGGTCTTCTC
    TTTCCTTTTT GTGTCACAAC AAGAGAAATG TGTATTTACT TTTAGAGTTT
    TTCTTAAGAG ATCATCCTCA ATTTCTTGTC ATACTGATTT TGTGTCCAAC
    TCTCAATGAA GGAGTAAGGA GTGAAATTAG ATATCATGAG TAACGTCAAA
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G07320.1 [+] show detail - ribosomal protein L4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L4/L1e 3.3e-61
    Gene3D no description 1.5e-29
    HMMPanther Ribosomal protein L4 1.1e-84
    HMMPanther Ribosomal protein L4/L1e, bacterial-type 1.1e-84
    HMMPfam Ribosomal protein L4/L1e 3.5e-53

    See the detailed result >

    AT1G07320.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L4
    Curator Summary
    encodes a plastid ribosomal protein L4
    Computational Description
    ribosomal protein L4 (RPL4); FUNCTIONS IN: structural constituent of ribosome, poly(U) RNA binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT2G20060.1); Has 8127 Blast hits to 8127 proteins in 2686 species: Archae - 3; Bacteria - 5615; Metazoa - 117; Fungi - 103; Plants - 95; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR