F26714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26714

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26714

Determination of introduced cDNA(s)

  • RAFL07-10-M24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-M24 - Resource: pda17292

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-M24 - full reading 
    CCCCCCCGAG TCACACAAAG AGTAAAGAAG AACAATGGCT TCCTCTATGC 
    TCTCTTCCGC TACTATGGTT GCCTCTCCGG CTCAGGCCAC TATGGTCGCT 
    CCTTTCAACG GACTTAAGTC CTCCGCTGCC TTCCCAGCCA CCCGCAAGGC 
    TAACAACGAC ATTACTTCCA TCACAAGCAA CGGCGGAAGA GTTAACTGCA 
    TGCAGGTGTG GCCTCCGATT GGAAAGAAGA AGTTTGAGAC TCTCTCTTAC 
    CTTCCTGACC TTACCGATTC CGAATTGGCT AAGGAAGTTG ACTACCTTAT 
    CCGCAACAAG TGGATTCCTT GTGTTGAATT CGAGTTGGAG CACGGATTTG 
    TGTACCGTGA GCACGGTAAC TCACCCGGAT ACTATGATGG ACGGTACTGG 
    ACAATGTGGA AGCTTCCCTT GTTCGGTTGC ACCGACTCCG CTCAAGTGTT 
    GAAGGAAGTG GAAGAGTGCA AGAAGGAGTA CCCCAATGCC TTCATTAGGA 
    TCATCGGATT CGACAACACC CGTCAAGTCC AGTGCATCAG TTTCATTGCC 
    TACAAGCCAC CAAGCTTCAC CGGTTAATTT CCCTTTGCTT TTGTGTAAAC 
    CTCAAAACTT TATCCCCCAT CTTTGATTTT ATCCCTTGTT TTTCTGCTTT 
    TTTCTTCTTT CTTGGGTTTT AATTTCCGGA CTTAACGTTT GTTTTCCGGT 
    TTGCGAGACA TATTCTATCG GATTCTCAAC TGTCTGATGA AAAAAAAAAA 
    AAAAAAGAGC TCTTGGATCC AGATGCTGAT GAGTGTCAGC CTCGAAGCAG 
    GAGACAGCTC GAGGATGTAG ATTATGTTTC TGTTGAATTT GAAGGGAAAA 
    AGCTAGGTTG GCAAGATATT GCTACTTACA AGCCTCCTGA AGATGCTTTA 
    TTCGCACACC CTAGGCTATT CAGAGCTTGT GTTCCACCGG GAATGCATCG 
    TTTCAGAGGG AACATATGGG ATTTTGACAG CAAACCAAAA GTTATGCAGA 
    CCCTCGGATA CCCTTTAACG ATGAATGATA GAATCAAGGA GATAACTGAA 
    GCAAGAAACA TCGAACTTGG ACTCGGTTTA CAGCTCTGCT TCTTGCATCC 
    TTCAAAGCAT AAGTTTGAAC ACCCGCGGTT TTGTTTTGAG CGGCTGGAAT 
    ATGTAGGACA GAAGATACAG GACATAGCAA TGGCTGAACG TTTGTTAATG 
    AAGCACTTGG ACGCACCAGG GAAGTGGTTG CAAGAGAAGC ATAGACGTCT 
    ATTAATGAAC AAATTCTGCG GCCGGTATCT TAGAGAAAAA CGTCTTCACA 
    ACTTTATAAT ATACTCAGAG GAGGTTCATG ATCGGTATGA ACATAACCGG 
    AGACTTAGGA ATCCGGCGAC AACCGCTGTC CAACAAGCCA TTCACGGCCT 
    CGCCTACACC ATCTACGGGA AACCCGATGT TCGGCGGCTC ATGTTTGAGG 
    TTTTCGACTT CGAACAAATC CAACCTAAAG CTGTCTGAAA ATCGAAGCTG 
    TCTCTCTCAT TTGTCTAATG TCTTTTAGTA TACTACTGGG TTTGATTTAT 
    GTAGTTAAAT GCTTAATTAC CTTTGGTGAA AAGTTGAAAA CTTTAAACTA 
    ACAA

    Gene models with high sequence identity

    1. AT4G37510.1 [+] show detail - Ribonuclease III family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    superfamily Ribonuclease III 6.5e-16
    superfamily Ribulose bisphosphate carboxylase, small chain 5.5e-54
    Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-56
    HMMPfam Ribonuclease III 1.6e-05
    HMMPfam Ribulose bisphosphate carboxylase, small chain 6.7e-42
    HMMPfam RbcS 2.6e-19

    See the detailed result >

    AT4G37510.1

    Model type
    Protein coding
    Short Description
    Ribonuclease III family protein
    Computational Description
    Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48121.2); Has 794 Blast hits to 789 proteins in 319 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 39; Plants - 42; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR