F26808

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26808

Determination of introduced cDNA(s)

  • RAFL09-16-K05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-K05 - Resource: pda01921

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-K05 - full reading
    GAACCACCAT ACACACTTCA ATTTCAAATA AGAGCTTTTC TTCAGTTGTT 
    GCTCAGAGAC TTAACCAATC AACCATGGCG AAGATGATGA TGTTGCAACA
    GCATCAGCCT TCTTTCTCTC TCCTTACTTC TTCTCTGTCT GACTTCAATG
    GCGCTAAGCT CCATTTACAA GTCCAGTACA AGAGGAAGGT TCATCAGCCA
    AAAGGAGCAC TCTATGTTTC AGCGTCGAGC GAAAAGAAGA TTCTGATAAT
    GGGTGGTACT CGATTCATTG GTCTGTTCTT GTCCAGGATC CTTGTCAAAG
    AGGGACATCA GGTTACATTG TTCACAAGGG GTAAATCTCC TATTGCCAAA
    CAATTGCCCG GTGAATCTGA CCAAGACTTT GCTGATTTCT CTTCTAAGAT
    TCTTCACTTG AAAGGAGACA GAAAGGACTA TGACTTTGTG AAGTCAAGTC
    TTTCAGCAGA AGGCTTCGAT GTTGTTTATG ATATCAACGG GAGGGAGGCC
    GAAGAAGTTG AGCCCATACT AGAAGCACTA CCCAAACTAG AGCAGTACAT
    CTACTGTTCT TCAGCTGGTG TTTATCTGAA ATCTGATATC TTGCCACATT
    GTGAGGAGGA TGCAGTTGAT CCGAAGAGCA GGCACAAGGG GAAGCTGGAG
    ACTGAGAGCT TACTGCAATC AAAAGGTGTA AACTGGACTT CTATACGTCC
    TGTCTACATC TACGGTCCAT TGAATTACAA CCCCGTCGAA GAATGGTTTT
    TCCACCGTCT AAAGGCAGGT CGCCCAATCC CGGTTCCAAA CTCTGGGATA
    CAGATCTCAC AACTCGGTCA CGTTAAGGAC TTGGCAACAG CCTTTCTCAA
    CGTGCTTGGT AACGAGAAAG CCAGCAGAGA GATATTCAAC ATCTCGGGGG
    AGAAATATGT TACCTTTGAT GGGTTAGCAA AAGCTTGCGC AAAGGCCGGT
    GGGTTTCCGG AGCCAGAGAT TGTTCATTAC AACCCGAAAG AGTTCGACTT
    TGGGAAGAAG AAGGCATTCC CTTTCCGTGA TCAGCATTTC TTTGCATCGG
    TGGAGAAAGC AAAGCATGTC CTCGGATGGA AACCGGAGTT CGACTTAGTG
    GAGGGTCTCA CTGACTCATA CAACCTTGAT TTCGGTCGCG GAACATTCCG
    GAAAGAAGCG GATTTCACCA CTGACGACAT GATTCTGAGC AAGAAACTTG
    TTCTTCAATA ATCGAAATCC TAAGAGTTGC TCATTCTTGG CTTGTATGAT
    TCTGATCACC CGGTTCTCTT AAAGTTCTGA ACTTTATTGT CATCTCACGT
    ATGTTATGGT CCGGATTTTG TTCGACTTTT CTCTAAAGAA GTCAAGCTAG
    GGACGATGAA GAAACCGAGA AAGTAAGTAC ACGAGAAAGA GACGGTCTGG
    CTCTTGACTT AAAAAAAAAA AAAAAAAAAA AGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT1G09340.1 [+] show detail - chloroplast RNA binding
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 2.9e-47
    HMMPfam NAD-dependent epimerase/dehydratase 0.00000000000024
    Gene3D NAD(P)-binding domain 1.6e-18
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 3.8e-117
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 3.8e-117

    See the detailed result >

    AT1G09340.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA binding
    Curator Summary
    Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
    Computational Description
    chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR