F27346

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27346

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27346

Determination of introduced cDNA(s)

RAFL03-05-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-05-A09 - Resource: pda00060

full reading [+] show sequence

GCCGGCGAAC AGTTTTATTA TCTCTCTCTT TCTGCGTGTT CCAATTTCTT 
CCACAAAACC CTAATTTTCT CTTAAACCCT GAAATTCGTG TAACCTTTCA 
ACAATCTCTT CAATTTTGTT TTCGATTCTG AATCCATTGT TTACGAATCT 
CTCATCTAAA GCTACATTCT TCGTTAAATC GTTTTTAATC GACTCGCTCA 
CTCGTGAGTT GACTCGTCAG CTGTTTCCAT AATTGCTTAT TGAATTTTTA 
TACGATGATG TTTCAATATG GAAGAAACTA GAGGAATTTC TGATCCAGAG 
AATGGGAGTT CGAGTTACGG CGGTAAACCG CCGAATCCAC TCTCCTTCTC 
TTCTTCCTCC GCCGCTGCTG CCGTTTACAG GCAAACCTTC GACGGCGAGC 
GATCGTTGGC GCCGTGTAAT AAGAGGTCAC TGGTTCGACA CTCATCTCTC 
GTGAAGACAA TGGTGTCAGA TATATCTGTT GAGAATGAGT TTACTATAGA 
GAAGAACAAG TCTGAGTTTG TTCCTGCTAC GCGTTCTGGA GCTTGGTCTG 
ATATTGGCTC CAGGTCAAGC ATGGAAGATG CTTATCTATG CGTTGATAAT 
TTCATGGATA GCTTTGGCCT TCTGAATTCT GAGGCTGGTC CAAGTGCCTT 
CTATGGGGTA TTTGATGGAC ATGGTGGGAA GCATGCCGCT GAGTTTGCAT 
GTCACCATAT ACCGAGGTAC ATTGTTGAAG ATCAAGAGTT TCCTAGTGAA 
ATCAATAAGG TGTTATCTTC AGCATTTCTT CAAACAGACA CTGCCTTCTT 
AGAGGCGTGT TCATTGGATG GGAGCCTTGC TTCAGGAACT ACTGCTTTGG 
CAGCTATTCT TTTTGGAAGG TCGTTGGTGG TAGCAAACGC TGGAGATTGC 
AGAGCAGTCT TATCCCGTCA GGGAAAAGCC ATTGAAATGT CAAGAGACCA 
CAAACCCATG AGCAGTAAGG AAAGGAGACG CATTGAAGCA TCGGGTGGAC 
ATGTATTCGA TGGCTATCTA AATGGACAAC TTAATGTGGC TCGAGCGCTA 
GGTGACTTTC ATATGGAAGG CATGAAGAAG AAGAAAGATG GTTCTGATTG 
TGGACCTCTA ATTGCAGAGC CTGAGCTCAT GACAACAAAA CTAACAGAAG 
AGGATGAGTT CCTTATAATT GGGTGTGACG GGGTTTGGGA TGTGTTCATG 
AGCCAGAATG CTGTAGATTT TGCCAGAAGG AGACTACAGG AGCACAATGA 
CCCGGTCATG TGTAGTAAGG AGCTGGTTGA GGAAGCTTTG AAGAGGAAGA 
GTGCTGATAA TGTGACGGCA GTGGTTGTGT GTCTTCAGCC ACAGCCACCA 
CCGAACTTGG TAGCGCCGAG GTTGAGAGTT CACAGAAGCT TCTCGGCGGA 
GGGTTTAAAA GATTTACAGA GCTACTTGGA TGGCTTGGGA AACTAATTGG 
GGGACATGAG GATGGTGACG AATGATTGAT TTCTCTGTTT TTGTTTTGTC 
TTTTCTTACA ATTTTATAGT TTGGGGTTTG GAGGTTTTGT TCTGTTAAAT 
TCTCGCAATT TGAGTAAGTT ATAACATGAG GCGGCATACA ATAATTTATT 
GTTTGGTAGG ATATATTTTT TTGTCACTTT TGCATAATAA TAATTCTGCT 
TCAGTCT

Gene models with high sequence identity

AT2G25620.1 [+] show detail - DNA-binding protein phosphatase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Protein phosphatase 2C, manganese/magnesium aspartate binding site	0
HMMPfam	Protein phosphatase 2C, N-terminal	9.2e-70
HMMPanther	PROTEIN PHOSPHATASE 2C	4.1e-155
HMMPanther	Protein phosphatase 2C	4.1e-155
HMMSmart	Protein phosphatase 2C-related	2.8e-83
superfamily	Protein phosphatase 2C-related	1.3e-78
Gene3D	Protein phosphatase 2C-related	1.9e-74

See the detailed result >

AT2G25620.1

Model type: Protein coding
Short Description: DNA-binding protein phosphatase 1
Curator Summary: Encodes DBP1, a member of the DBP factors (DNA-binding protein phosphatases) featuring sequence-specific DNA-binding and protein phosphatase activity. DBP1 is involved in plant-potyvirus interactions. Loss-of-function of DBP1 renders resistance to potyviruses.
Computational Description: DNA-binding protein phosphatase 1 (DBP1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: regulation of defense response to virus; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G33700.1); Has 7196 Blast hits to 7030 proteins in 671 species: Archae - 12; Bacteria - 774; Metazoa - 1729; Fungi - 719; Plants - 2627; Viruses - 7; Other Eukaryotes - 1328 (source: NCBI BLink).
Link: InterPro Scan - TAIR