F27601

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27601

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F27601

Determination of introduced cDNA(s)

  • RAFL15-47-C07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-47-C07 - Resource: pda13114

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-47-C07 - full reading 
    ACTTTCTCTA TTCAATCTCA CACGCGCTAA ACCATAACCC GATATTACTA 
    ATGACGAACT ACGGTGCGAT TCCGACGTCG TCTCATGCAT CTCCGTTGGT 
    GGATGTCGAG TCTCTCTCAC GCGCTAAACA CCGTATCAAA GCCGGGCTAG 
    CCACGCGCCG TGCTTGGAGA GTGATGTTCG ATTTCCACTC CATGGGACTG 
    CCTCACGGTG TCTCCGATGC GTTCACAAGA ATCAAGACCA ATCTTGCTTA 
    CTTCCGTATG AACTACGCAA TCGTTGTCTT GATCGTTATC TTCTTCAGCT 
    TGATCTGGCA TCCGACATCG CTCATCGTCT TCACCGTCTT GGTCGTTGTT 
    TGGATCTTTC TGTATTTTCT CCGTGATGAG CCTATCAAGC TGTTCCGGTT 
    TCAGATCGAT GATCGGACGG TCTTGATTGT TTTATCGGTG TTAACCGTCG 
    TTTTACTCCT GTTGACCAAC GCGACGTTTA ATATTGTTGG AGCGCTTGTG 
    ACCGGAGCTG TGTTGGTTTT GATCCATTCG GTGGTTAGGA AGACGGAGGA 
    TCTTTTCTTG GATGAAGAAG CGGCGACGAC TGAGACTTCT GGGCTGACGT 
    CATACCCGTC GACTTAAATC GTTTCATCTC GAAATTTGTG TATCTTTTCT 
    ATTTTTGTAT ATTATCTTGT TTTTTTAATT ATGCGTAATC AATTTTTATT 
    GGTGTGAGTT TGGTTTGAGA CTTTCTCTCT CTCTTTTGTT TTCTGAGTTT 
    TGAGCTCTGT CTGAAGTTTG AACAATTCTA ATTTGTTATA ATTTTTATTA 
    AAAAAAAAAA AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G13720.1 [+] show detail - PRA1 (Prenylated rab acceptor) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 4.5e-55
    HMMPfam Prenylated rab acceptor PRA1 4.8e-48

    See the detailed result >

    AT3G13720.1

    Model type
    Protein coding
    Short Description
    PRA1 (Prenylated rab acceptor) family protein
    Computational Description
    PRA8; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.F4 (TAIR:AT3G13710.1); Has 408 Blast hits to 408 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 28; Plants - 309; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR