F27620

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27620

Determination of introduced cDNA(s)

RAFL05-16-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-J06 - Resource: pda03025

full reading [+] show sequence

AGTCTTGTCT TCTATTATGC AAAAGGTCTT CTTGGCCATG GATACTTGTG 
CTCTAGTAAT CCATCAGTCT CTGTCTCGCA TCAAACTTTC TCCTCCCAAA 
TCTTCTTCTT CTTCTTCTTC TGCTTTCTCC CCTGAATCCT TACCGATCAG 
ACGGATCGAG CTGTGTTTCC GAGGAGCTAT ATGTGCCGCC GTACAAAGAA 
ACTACGAAGA AACGACCTCC TCCGTGGAAG AGGCAGAGGA AGATGATGAG 
TCATCATCAT CGTACGGAGA AGTGAACAAG ATCATTGGAA GCCGAACGGC 
GGGGGAAGGA GCCATGGAGT ACCTTATCGA GTGGAAGGAC GGCCATTCTC 
CGTCGTGGGT TCCATCGAGC TACATCGCAG CAGACGTAGT GTCGGAGTAC 
GAGACACCCT GGTGGACGGC AGCTAGAAAA GCCGACGAGC AGGCCCTGTC 
ACAGCTCCTG GAGGACCGAG ACGTCGATGC CGTGGACGAA AACGGCCGGA 
CGGCTCTGCT TTTCGTGGCA GGTCTGGGGT CGGACAAGTG CGTAAGGCTT 
CTGGCGGAGG CTGGAGCCGA TCTCGACCAC CGAGACATGA GGGGAGGCTT 
GACGGCGCTG CACATGGCGG CTGGTTACGT GAGGCCGGAG GTGGTGGAGG 
CGCTGGTGGA GCTGGGAGCT GATATTGAAG TGGAAGACGA GAGAGGGTTA 
ACGGCGTTGG AACTAGCGAG GGAGATTCTG AAGACGACGC CGAAGGGGAA 
TCCGATGCAG TTCGGGAGGA GAATTGGGTT AGAGAAAGTG ATCAATGTCC 
TGGAAGGACA AGTGTTCGAG TACGCCGAGG TGGATGAGAT CGTAGAGAAA 
CGAGGGAAAG GCAAAGACGT TGAATATCTG GTCAGATGGA AGGACGGTGG 
AGATTGCGAG TGGGTGAAAG GTGTACACGT GGCGGAAGAT GTGGCTAAGG 
ACTACGAGGA TGGGCTGGAG TACGCTGTAG CGGAGAGTGT GATCGGGAAG 
AGGGTGGGAG ACGATGGGAA GACCATCGAG TATCTTGTCA AATGGACTGA 
TATGTCTGAT GCCACTTGGG AGCCTCAGGA CAATGTCGAC TCTACTCTTG 
TTCTACTCTA CCAACAACAA CAACCAATGA ATGAATGATT GATTTTGATG 
ATTACATTCT TCTCAATTTG CTTCTTTCTC ATATGTGTTG GTTCATCTGA 
CCGGTTCGGT TGGTACGTAC CGGTACATTT TCATTTTCTT TTAAGATGTG 
ATCTTGATGG TTTTTGGCCT TTTGGGGACA CTATTTGATT TTATATCCAT 
GCTTTGAATT TTGCTTCCCT TTTTGGGGAG ATTCATGATC

Gene models with high sequence identity

AT2G47450.1 [+] show detail - chloroplast signal recognition particle component (CAO)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Chromo domain	10.874
ProfileScan	Ankyrin repeat	10.633
ProfileScan	Ankyrin repeat	12.77
ProfileScan	Ankyrin repeat-containing domain	24.878
HMMSmart	Chromo domain	6.7e-07
HMMSmart	Ankyrin repeat	1500
HMMSmart	Ankyrin repeat	1.8
HMMSmart	Ankyrin repeat	0.0003
HMMSmart	Chromo domain	6.6e-08
HMMSmart	Chromo domain	3.2e-10
HMMPfam	Chromo domain	9.6e-09
HMMPfam	Ankyrin repeat	1.1e-05
Gene3D	Ankyrin repeat-containing domain	3.6e-20
Gene3D	no description	0.00073
superfamily	Ankyrin repeat-containing domain	2.3e-28
superfamily	Chromo domain-like	4e-08
superfamily	Chromo domain-like	7.1e-05
Coil	coiled-coil	0
HMMPanther	ANKYRIN REPEAT DOMAIN PROTEIN 2 (ATAKR2)	8.5e-112
HMMPanther	ANKYRIN REPEAT-CONTAINING	8.5e-112

See the detailed result >

AT2G47450.1

Model type: Protein coding
Short Description: chloroplast signal recognition particle component (CAO)
Curator Summary: A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
Computational Description: CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
Link: InterPro Scan - TAIR