F27833

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27833

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27833

Determination of introduced cDNA(s)

  • RAFL09-68-P04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-P04 - Resource: pda06632

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-P04 - full reading 
    ATCTCTCCAC TCACAAATAT TTTGATTTGT TTTGTAACTG TTTCTCTTTC 
    TCTGGAGCTT TCTTCTTCTT CTTCAATAAT CGATTTAGGT TTTTCAAAGC 
    TAAGTGTTTG TGTTGTGATA ATGACTAGTA GCGAGGAAGT AGTTGAAGTG 
    ACGGTGGTTA AAGCACCTGA AGCTGGCGGA GGAAAGTTAT CACGTCGGAA 
    GATTCGGAAG AAAGACGCCG GTGTTGATGG TTTGGTGAAG TGGGAGAGAT 
    TTCTCCCGAA AATCGCGCTT AGAGTTTTGC TCGTTGAAGC TGATGATTCT 
    ACTAGACAGA TTATCGCTGC TCTTCTCAGG AAATGTAGTT ACAGAGTTGC 
    TGCAGTACCT GATGGCTTAA AAGCTTGGGA GATGCTAAAA GGAAAGCCTG 
    AAAGTGTTGA TTTGATATTA ACAGAGGTTG ATCTACCTTC AATATCTGGA 
    TATGCTCTGC TAACACTTAT CATGGAGCAT GATATTTGCA AGAACATTCC 
    TGTTATAATG ATGTCGACAC AGGACTCGGT GAATACTGTG TATAAGTGTA 
    TGTTGAAAGG TGCGGCTGAT TATCTTGTTA AGCCGTTGAG GAGGAATGAG 
    CTTAGAAATC TTTGGCAGCA TGTCTGGAGA AGACAAACTT CACTTGCTCC 
    TGATAGCTTT CCATGGAATG AGAGTGTTGG ACAGCAGAAA GCCGAGGGTG 
    CGTCTGCAAA CAACTCGAAC GGAAAGAGAG ACGATCATGT TGTGAGTGGG 
    AATGGTGGTG ATGCCCAGAG CTCGTGTACA AGACCAGAGA TGGAAGGTGA 
    GAGCGCAGAC GTGGAGGTTA GTGCGAGAGA CGCAGTACAG ATGGAGTGCG 
    CAAAGTCTCA GTTTAATGAG ACACGGCTTC TAGCAAATGA GTTGCAGAGT 
    AAGCAAGCAG AAGCCATTGA CTTCATGGGA GCATCGTTTA GAAGAACTGG 
    ACGACGTAAC AGAGAAGAAA GTGTTGCTCA ATACGAATCT CGGATAGAGC 
    TTGATCTTTC TCTGAGAAGA CCTAATGCTT CTGAGAACCA ATCTTCTGGA 
    GACCGGCCTT CTCTTCATCC TTCTAGTGCC TCAGCTTTCA CACGGTACGT 
    TCACAGGCCG TTGCAGACAC AATGTTCAGC CTCCCCAGTG GTTACTGATC 
    AAAGAAAGAA TGTTGCAGCA AGTCAAGATG ATAACATTGT GCTAATGAAC 
    CAATACAATA CATCTGAACC GCCTCCAAAT GCTCCAAGAA GAAACGACAC 
    CAGCTTTTAC ACTGGAGCTG ACTCACCTGG TCCACCGTTT AGTAATCAGC 
    TGAATTCTTG GCCGGGACAG AGTTCATACC CTACGCCAAC CCCTATCAAC 
    AATATACAGT TCAGAGATCC CAACACAGCT TATACATCTG CAATGGCTCC 
    TGCTTCACTC TCCCCAAGCC CTAGTTCCGT TAGCCCGCAT GAGTACAGTT 
    CCATGTTTCA CCCATTCAAC AGTAAACCCG AGGGGTTACA AGACCGGGAT 
    TGTTCCATGG ATGTAGATGA GAGGAGATAC GTCTCTTCTG CAACCGAACA 
    TAGTGCAATA GGCAATCACA TTGATCAGCT TATTGAGAAG AAGAACGAAG 
    ATGGCTATTC ATTATCCGTC GGGAAAATTC AGCAATCTCT TCAACGAGAA 
    GCCGCTTTAA CCAAATTCCG AATGAAGCGA AAGGACAGAT GTTATGAGAA 
    AAAGGTTCGT TACGAGAGCC GGAAGAAATT AGCAGAGCAA CGACCACGAA 
    TCAAAGGCCA ATTCGTTCGT CAAGTCCAAT CCACACAAGC TCCATAGTGA 
    TCCAACAAAT TGATATATTA TATACAGTTC AATTTTGTAT CATCAACTAG 
    AGGAATTTTG TTTTCTCCGA TGCAGGAGCT GTTCTTTGTA CAACTAATTC 
    CACATACGTT AGATTTGGTG ACACATTTGT GTGTACATAC ACATCTTTCG 
    AGCTTGTTGT TGAGTTTTAG TTAGAATCTA CGTTAGATCT GTAACC

    Gene models with high sequence identity

    1. AT5G24470.1 [+] show detail - pseudo-response regulator 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.8e-25
    ProfileScan Signal transduction response regulator, receiver domain 28.125
    ProfileScan CCT domain 15.259
    HMMSmart Signal transduction response regulator, receiver domain 7.7e-26
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 1.3e-16
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 1.3e-16
    HMMPfam Signal transduction response regulator, receiver domain 2.1e-20
    HMMPfam CCT domain 2.4e-18
    superfamily CheY-like 5.5e-29

    See the detailed result >

    AT5G24470.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 5
    Curator Summary
    Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 5 (PRR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR