F27905

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27905

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27905

Determination of introduced cDNA(s)

RAFL11-11-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-11-G19 - Resource: pda17988

full reading [+] show sequence

CCGGGCTTGC GTGATCTCTC TCTTCTCTTC TCTCTCTCAC TCATCCAAAT 
CTTTGATCAT CTCATCATCA TTGGACTTGA AGCTAACTCC AGAGTTTTAT 
CCAGATTCAT CATTTTCCAA CGTTTTTCTT CAATCGAATC ATCAGCGAGT 
TTGGTTCCGA CGACGATCTT AGTAGCTTCA TAAGCTCAAG ATTCTTCAGG 
TTTCGGTGGA TTTTCTTGAG CTCTTCTAAG CTTCTCCATT TTGTGAGCCT 
CCGATTTCGA ACCTGGTAGT GTTGTGGATC TCACTGGACC ACGAAGCTTT 
CTTCACTGAG CTAAGCTTGA AGTCAATTCC TCTGTTCGAC AATCAATAGA 
GGAAGATGAA TTATTTCCCA GACGAGGTTA TAGAGCACGT GTTTGACTTC 
GTAGCTTCTC ACAAAGACAG GAACTCGATA TCTCTGGTCT GCAAATCATG 
GCACAAGATC GAGAGGTTTA GTAGGAAGGA AGTGTTCATC GGAAACTGCT 
ACGCGATTAA CCCGGAGAGG TTGATCAGGA GGTTTCCATG TCTCAAATCC 
TTAACTTTAA AAGGGAAGCC TCATTTTGCA GACTTCAACT TGGTTCCTCA 
TGAATGGGGA GGTTTCGTGC ATCCTTGGAT TGAAGCTTTG GCTAGAAGCC 
GTGTGGGACT TGAGGAGCTG AGGTTGAAGC GGATGGTTGT AACAGATGAA 
AGCTTGGACC TTCTTTCACG TTCTTTTGCA AATTTCAAGT CTTTGGTTCT 
TGTTAGCTGT GAAGGGTTTA CCACTGATGG CTTAGCTTCC ATTGCCGCTA 
ATTGCAGGCA TCTTCGTGAG CTGGACTTGC AAGAGAATGA GATTGATGAT 
CATAGAGGTC AATGGCTGAA CTGTTTTCCA GATAGCTGCA CTACTCTTAT 
GTCGTTGAAT TTCGCTTGCC TTAAAGGAGA GACCAATGTT GCTGCTTTAG 
AAAGGCTTGT TGCTAGGTCA CCAAACCTGA AGAGCTTGAA GTTAAACCGT 
GCAGTACCGC TTGACGCACT CGCAAGGTTA ATGAGTTGTG CGCCGCAGCT 
AGTGGACTTA GGAGTAGGGT CTTATGAGAA TGAGCCAGAT CCTGAATCTT 
TTGCAAAACT CATGACTGCC ATTAAGAAAT ACACATCGTT AAGGAGCTTG 
TCTGGCTTTT TAGAGGTTGC TCCACTCTGC CTCCCAGCGT TCTACCCAAT 
TTGCCAAAAC CTTATCTCTT TGAACCTCAG CTATGCAGCT GAAATCCAAG 
GCAACCACCT CATTAAGCTT ATTCAGCTTT GCAAGAGACT TCAACGATTA 
TGGATATTGG ATAGTATTGG TGACAAAGGA CTTGCGGTTG TCGCTGCCAC 
ATGTAAAGAG TTACAAGAGC TTAGAGTTTT TCCCTCTGAT GTACATGGTG 
AAGAAGATAA CAACGCATCT GTGACTGAGG TTGGACTAGT CGCCATTTCC 
GCAGGTTGCC CTAAACTTCA TTCGATTCTG TACTTCTGCA AACAGATGAC 
AAACGCAGCG CTCATAGCCG TGGCCAAAAA CTGTCCAAAC TTCATCCGGT 
TCAGGCTATG CATTCTCGAG CCACACAAAC CTGACCACAT TACATTTCAA 
TCACTGGACG AGGGCTTTGG TGCAATCGTA CAAGCTTGCA AGGGTCTAAG 
ACGGCTCTCT GTCTCCGGTC TCTTAACCGA TCAAGTCTTT CTCTACATCG 
GTATGTACGC GGAACAGCTC GAGATGCTTT CGATAGCTTT TGCGGGGGAC 
ACTGACAAAG GAATGCTCTA TGTGTTGAAT GGATGCAAAA AAATGAGGAA 
GCTGGAGATA AGGGACAGTC CTTTTGGGAA CGCTGCGCTT CTTGCTGACG 
TGGGTAGGTA CGAAACAATG CGATCCCTTT GGATGTCGTC TTGTGAAGTA 
ACACTCGGTG GCTGCAAGAG GCTCGCGCAG AATTCGCCAC GGCTTAACGT 
AGAGATCATC AACGAGAATG AGAATAATGG GATGGAACAG AATGAAGAAG 
ATGAAAGAGA GAAGGTTGAT AAACTTTACC TCTACCGAAC AGTGGTTGGG 
ACTAGAAAAG ATGCACCACC ATATGTTAGG ATTCTTTAGT CTCTTTGCAC 
CTTCATGTGT TTTCAAACTT TTCTTTGTAC TAGTTTTTGC CTTTTATCAA 
ACTTGGAACA AAAAAA

Gene models with high sequence identity

AT1G12820.1 [+] show detail - auxin signaling F-box 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.6e-29
Gene3D	no description	2.3e-14
HMMSmart	F-box domain, cyclin-like	0.0001
HMMPanther	GRR1-RELATED, ARATH	3.6e-280
HMMPanther	F-BOX/LEUCINE RICH REPEAT PROTEIN	3.6e-280
superfamily	RNI-like	3.3e-29

See the detailed result >

AT1G12820.1

Model type: Protein coding
Short Description: auxin signaling F-box 3
Curator Summary: Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.
Computational Description: auxin signaling F-box 3 (AFB3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1); Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 823; Fungi - 153; Plants - 1347; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link: InterPro Scan - TAIR