F28024

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28024

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28024

Determination of introduced cDNA(s)

  • RAFL05-07-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-P19 - Resource: pdz87451

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-07-P19 - 5 prime EST 
    TGATGATCGA TCAGATATCT CAATTTCAGG AACCCAGAAA GAGGGACTTG 
    TCTTTTACCT CCAAAGGGTT CCTGCCGTTT CTTTTCTACA ATTTTTCTCC 
    TGCTAATTAT CAAATTTTTC TTCTGATTTT CATTGTTTGT TAGAGATTCT 
    TCTTCTCCTC TGCTTTTCTA TTCTCTGGGA GCTCGATGAT GGATGATAAA 
    GCTCGCAAAG AANAAGAACA TCATGTGTCT CACCAACATA ATCATTCTCC 
    TCTGCAAAGG GATGGAAATT CTGCTGAGAT TGCACAAGGA CAAGAGCTAT 
    CATCACCGGG CCGANACCTA TGGAGGCNAG GTCTTGTGT

    Gene models with high sequence identity

    1. AT3G09760.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 99.11

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-07-P19 - 3 prime EST 
    GCAAGACTTT ATAAAAGCCC AATAGTTTAA TATACTAAAA GATACAAAAC 
    TTCTTCTTTT TGTTTTTCTT TAAGAAAACA ACAGATGATA TACATACACT 
    CACACTCACA CTCACATTCA CACACAAAAG AGACCCCCAA AATT

    Gene models with high sequence identity

    1. AT3G09760.1 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-75; Score: 100.00

    AT3G09760.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03180.2); Has 1083 Blast hits to 1078 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 334; Fungi - 71; Plants - 602; Viruses - 25; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR