F28039

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28039

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28039

Determination of introduced cDNA(s)

  • RAFL06-82-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-K21 - Resource: pda03837

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-K21 - full reading 
    AAAGTAAAGA AACAATGGCG TATTCTCTTC CTACATTTCC CCAAGCCTTA 
    CCTTGCTCGT CAACCAAAAC TTCTTCCTCC TTGGCTACCT TCCGATCTCC 
    TTTCTTAAGA TTCAATGGTT CCACTTCCTT AATCCCCTCC TCTATCTCCA 
    TCACTTCACG TGGCACATCC TCCCCGACCA TCATCCCACG TGCTGCCGCC 
    TCAGAATCCG ACTCTAACGA AGCCCTAGCC AACACAACCT TCCACGGCCT 
    CTGCTATGTC TTGAAAGACA ACATAGACAC CGACCAGATC ATCCCAGCAG 
    GAGCCGCTTG CACCTTCCCA TCGAACCAGC AAGAGCGTGA TGAGATCGCC 
    GCTCACGCTC TCTCTGGTCT ACCAGACTTC CACAAAACAC GGTTCATTGA 
    GCCAGGAGAG AACAGATCAA AGTACTCAAT CATAATCGGC GGCGAAAACT 
    TTGGTTGCGG ATCGTCACGT GAACATGCTC CGGTCTGTCT TGGAGCAGCT 
    GGAGCTAAAG CCATAGTTGC TGAGTCTTAC GCAAGAATCT TTTTCCGTAA 
    CTCGGTTGCT ACAGGAGAGG TGTTTCCGCT CGAGTCAGAG GTTAGAGTCT 
    GTGAGGAGTG TAAGACAGGA GATACGGTGA CGATCGAGCT GAGTGATAGT 
    GGTGGTTTAT TGACTAATCA CACGACCGGT AAAAACTATA AGCTGAAGTC 
    GATCGGTGAT GCTGGACCGG TTATTGATGC TGGTGGTATT TTTGCTTATG 
    CGAGGATGAT GGGAATGATT CCATCATTAG CTTAATCCTC TTCCATAACC 
    ATGATGGTGT TCTTGTATGC ATAACTATTT GATGAATATT TGTGTTTTAG 
    AGTTTTCTAT TTTCTTAACT TTTTTATGTT TGTTTGATTT GGTATTGTTG 
    TTGTTACCTA AAGAATAAGA AATCAAAAGC AAAATAGACC GACATGTTCC 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT2G43100.1 [+] show detail - isopropylmalate isomerase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aconitase/3-isopropylmalate dehydratase, swivel 9.3e-34
    HMMPfam Aconitase A/isopropylmalate dehydratase small subunit, swivel 2.6e-18
    Gene3D Aconitase/3-isopropylmalate dehydratase, swivel 3e-27
    HMMPanther 3-isopropylmalate dehydratase, small subunit-like 2.2e-51
    HMMPanther Aconitase-like core 2.2e-51

    See the detailed result >

    AT2G43100.1

    Model type
    Protein coding
    Short Description
    isopropylmalate isomerase 2
    Computational Description
    isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR