F28044

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28044

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28044

Determination of introduced cDNA(s)

  • RAFL05-11-O04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-O04 - Resource: pda09311

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-O04 - full reading
    TGCCACTCAT TTTTCCTATT TTTCGCTTTG CGTGCCTTCT TATCAACTTG 
    TAAACAAAGC TACAAATATC TTTAAATAAG GACCCAACTC TTTTTCAATT
    CCTCCCATCA ATCTTCTTCA TTTGTTCTTC TGTTGGTGGT GGTGATCTAG
    TTTTCAAAGA ATCGATTTTG CCAAGTGGGT TCTTCTTGAT AACCTTTCTT
    CTTCTTTGAA ATGGGTTCTT CTGTGGAGCA GAACATTCTT GTTACTGGTG
    GTGCTGGCTT TATCGGGACG CATACTGTTG TTCAACTTCT CAAAGATGGT
    TTTAAGGTTT CGATCATCGA TAATTTTGAT AACTCTGTTA TCGAAGCTGT
    TGATAGAGTT AGGGAGCTTG TTGGTCCTGA TCTCTCCAAG AAGCTCGACT
    TCAATCTGGG TGATCTAAGA AACAAAGGGG ACATTGAGAA ACTATTCTCC
    AAGCAGAGAT TTGATGCTGT GATTCATTTT GCGGGTCTTA AAGCTGTGGG
    TGAGAGTGTT GAAAACCCTC GCCGCTACTT TGACAATAAC TTGGTTGGAA
    CAATCAATCT ATATGAGACC ATGGCAAAGT ACAACTGCAA AATGATGGTG
    TTTTCATCTT CTGCCACTGT TTATGGACAA CCTGAAAAGA TTCCATGCAT
    GGAAGACTTT GAATTAAAGG CTATGAATCC TTATGGTCGT ACTAAGCTCT
    TTCTTGAAGA AATAGCTAGA GATATTCAAA AGGCAGAACC GGAATGGAGA
    ATTATTCTGC TGAGGTACTT CAATCCTGTA GGAGCACATG AGAGTGGCAG
    TATTGGTGAG GATCCAAAAG GCATCCCCAA TAACCTCATG CCTTACATCC
    AACAAGTGGC CGTTGGACGT TTACCGGAAC TCAATGTCTA TGGACATGAC
    TATCCCACCG AGGATGGTAG TGCGGTAAGA GACTACATCC ATGTGATGGA
    TTTAGCAGAT GGCCATATCG CTGCGCTCAG GAAGCTATTT GCTGATCCAA
    AGATTGGTTG TACTGCTTAC AATCTAGGGA CTGGTCAAGG AACGTCTGTG
    TTAGAAATGG TTGCAGCTTT TGAAAAAGCT TCCGGCAAGA AAATCCCGAT
    TAAGCTCTGT CCGAGAAGGT CAGGAGATGC AACAGCAGTT TATGCTTCAA
    CAGAGAAGGC TGAGAAAGAA CTTGGCTGGA AGGCAAAATA TGGAGTGGAT
    GAGATGTGCA GAGATCAGTG GAAATGGGCA AACAATAATC CATGGGGTTA
    CCAGAATAAG CTTTGAATTT ACTTCTTTTG TTTGGAGTTA CCATTTCTAA
    TTACTCAAAT CTAAAAGAAA GAAATATACA TACATATGAT GATATAGTTG
    TGCTTTATAT TCCACATGTA TCGAACTGAT CTCTTACTTC GATGAATAAA
    ATGGAAAGTT GATTTGATTG

    Gene models with high sequence identity

    1. AT1G12780.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UDP-glucose 4-epimerase 2.3e-190
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 2.3e-190
    HMMPfam NAD-dependent epimerase/dehydratase 3.8e-50
    Gene3D NAD(P)-binding domain 3.5e-61
    FPrintScan Nucleotide sugar epimerase 8.5e-05
    FPrintScan Nucleotide sugar epimerase 8.5e-05
    FPrintScan Nucleotide sugar epimerase 8.5e-05
    HMMTigr UDP-glucose 4-epimerase 1.3e-169
    superfamily NAD(P)-binding domain 1.4e-102

    See the detailed result >

    AT1G12780.1

    Model type
    Protein coding
    Short Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1
    Curator Summary
    Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
    Computational Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR