F28143

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28143

Determination of introduced cDNA(s)

  • RAFL05-15-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-P17 - Resource: pda02659

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-P17 - full reading 
    ATCGGAAGCG GTGGCTTTCT CGGCCCTCAA CGAGAGAATC TGATGTTGGT 
    GAAGCCCAGT ATCATCTCTG GCTTGGTACG ATTGACTTCT CATTCACCTT 
    CTTCTTCTTC AAGTGTGCTC AGAAGGCAAG AGTTCTTGGT ACGAACGCTT 
    TGTGGGTCAC CAATCATCAG AGCAATGAGT TCCACATCAG AGGCCGACGC 
    TGAGAGTGTT CTTAGAACCG TGACGCCATC GCTCGATCTC AAACGACACA 
    AAGGCCAAGC TGGGAAGATA GCTGTGATTG GAGGATGTCG TGAATACACA 
    GGAGCTCCAT ACTTCGCTGC CATTTCAGCT TTGAAAATCG GTGCTGATTT 
    GTCTCATGTA TTCTGCACGA AAGATGCAGC TCCTGTTATA AAGAGCTATA 
    GTCCTGAGCT TATAGTTCAC CCTGTTCTTG AGGAATCATA TAGCATCAGT 
    CAACTCAGTG AAGAAGATAA AAGAGAAGTT CAAGATAAAG TGCTTGGAGA 
    AGTCGGTAAA TGGATGGAAA GATTTGATTG TCTTGTTATT GGTCCTGGTT 
    TGGGAAGAGA TCCATTTCTC CTGGAATGTG TGAGTATTAT CATGCTTCTT 
    GCCAAAAAGT CCAATGTTCC TTTTGTTATA GATGGGGACG GGCTGTTTCT 
    TGTAACAAAT TCCATTGATC TTGTCCACAG CTATCCGCTT GCTGTCTTAA 
    CCCCAAATGT GAATGAGTAT AAGCGCCTGG TTCAAAAAGT ACTGAATTGT 
    GAAGTAGATG AACAAAATGC TGAAGATCAG TTACGTTCTT TGGCCAAACA 
    GATTGGTGGT GTCACGATTC TCAGGAAAGG GAAATCTGAT CTTATAAGCA 
    ATGGGGAGAC AGTAAAATCA GTAAGCATAT ATGGTTCACC AAGGCGCTGT 
    GGTGGACAAG GCGATATTCT CTCTGGAGGT GTTGCAGTGT TTTTGTCATG 
    GGCACAACAG CTTAAATCCG ATCCTGAAAG TCCCTCTGAG AATCCAGCTA 
    TCTTGGGATG CATAGCTGCA TCTGGCCTTC TCAGAAAGGC TGCATCTCTG 
    GCCTTTACAA AACATAAGAG ATCAACTCTC ACAAGCGACA TTATCGAATG 
    TTTAGGGGAG AGTTTGGAGG ATATCTGCCC TGCATCTTAA TCTCAGAACA 
    CATGAAGTAG AGTTGTCTTG CCTTCTACAA CATCTTATTG TCTGTGGGAA 
    ACTTTAGAAG TGTCTGTTCT CTTGTGTCTA TTTACCTCAC AATTGTTTTT 
    TCTGAATAAT AAAACTTGAA TGCTGTGATT ACCT

    Gene models with high sequence identity

    1. AT5G19150.1 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribokinase-like 1.2e-53
    HMMPfam Uncharacterised protein family, carbohydrate kinase-related 7.7e-50
    Gene3D no description 3.4e-39
    ProfileScan Uncharacterised protein family, carbohydrate kinase-related 82.007
    HMMPanther UNCHARACTERIZED 4.4e-72
    HMMTigr Uncharacterised protein family, carbohydrate kinase-related 3.6e-40

    See the detailed result >

    AT5G19150.1

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, carbohydrate kinase-related (InterPro:IPR000631); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR