F28150

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28150

Determination of introduced cDNA(s)

  • RAFL03-02-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-02-D07 - Resource: pda00250

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-02-D07 - full reading 
    GTCGCGCATT TAGCGTTGTT TTGAAGCTCT CTCTTTCAAA TTCTGTTCGT 
    CTCTCGCGAT CTCTCTCTCT CTCTCAGATA GCTCCGAAAC TTTCACGCAG 
    AGTTAAGTGA AGCAGGATGG GATTGTCATT CGCCAAGCTT TTTAGCAGGC 
    TTTTTGCCAA GAAGGAGATG AGAATTCTGA TGGTTGGTCT TGATGCTGCT 
    GGTAAGACCA CCATTTTGTA CAAGCTCAAG CTCGGAGAGA TTGTAACCAC 
    CATTCCCACT ATTGGGTTCA ATGTGGAGAC TGTGGAGTAC AAGAACATCA 
    GTTTCACAGT GTGGGATGTC GGCGGTCAGG ATAAGATCCG TCCCTTGTGG 
    AGGCATTACT TCCAGAACAC CCAAGGTCTT ATCTTTGTGG TGGACAGCAA 
    TGACAGAGAC CGTGTTGTTG AGGCTAGAGA TGAATTGCAC CGAATGTTGA 
    ATGAGGACGA GCTGCGTGAT GCTGTTCTGC TCGTATTTGC TAACAAGCAG 
    GATCTCCCAA ATGCTATGAA TGCAGCTGAG ATCACGGATA AGCTTGGTCT 
    CCACTCTCTC CGTCAGCGTC ACTGGTACAT CCAGAGCACA TGTGCCACTT 
    CAGGCGAGGG GCTTTACGAA GGTCTTGACT GGTTGTCCAA CAACATTGCC 
    GGCAAGGCGT AGAGGGAAAG TTCGTGGTGG AGTTGATTTG CTGAGCAAAT 
    CTGGATGCAG GGGCAAACAT TATCTGAATT TTTTTTTTGG TTTCCGTTTT 
    CGTTATTGTT CTGCTTTTTT TTTTGGGATA TGTCGATGGA TTTTGTGATT 
    GTACGTAGAA CTTAGAAAAA AACTACCTTT TATATAGTTT TGGTAAAACT 
    GTAATCGAAG ATTTCACCTA CTGCTTTCGT GGTTTTGGTC AC

    Gene models with high sequence identity

    1. AT1G23490.1 [+] show detail - ADP-ribosylation factor 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-66
    HMMSmart ADP-ribosylation factor 1.3e-135
    HMMSmart Small GTPase SAR1-type 1.8e-25
    HMMSmart Ras small GTPase, Rab type 0.0059
    HMMPfam ARF/SAR superfamily 4.5e-80
    ProfileScan ARF 25.659
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    HMMTigr Small GTP-binding protein 2.7e-18
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-55
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 3.4e-146
    HMMPanther ARF/SAR superfamily 3.4e-146

    See the detailed result >

    AT1G23490.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor 1
    Curator Summary
    Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
    Computational Description
    ADP-ribosylation factor 1 (ARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT1G70490.2); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR