F28349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28349

Determination of introduced cDNA(s)

  • RAFL06-75-E06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-E06 - Resource: pda03554

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-E06 - full reading 
    ACAAGCAATA AAGAGAGAAA AAAATATAAA GCTACCAAAG AGAAAATGGT 
    GACACTAACA CCATCTTCTG CTAGTACCCC AAAAACATCT TTTGATTTCA 
    TGAAGAATAA CAACAGTCAC AGCAGTCTCT ATGTTTCTTC TTCTTCTTAC 
    TTGAGCAGCA AGGAAGATGC TCTTGTCACG ACCAAGAAGC TCATGGAACC 
    AAGCAAAACA CTAAACATGA GCATTAATCC AAAACAAGAG GAGTTTGGTG 
    ATGAGAAGAA AATGGTGAAG AAAGCTCCTG AAGATCCAGA GATTGGTGTG 
    TTTGGAGCTG AGAAGTACTT CAATGGAGAC ATGGATTCAG ACCAAGGTTC 
    TAGTGTTCTG TCTCTGACAA ACCCAGAAGT TGAGAGAACC GTCGTCGACT 
    CGAAGCAGAG CGCGAAGAAA TCTACTGGTA CTCCGAGTGT CCGGTCTGAA 
    TCAAGCTGGA ATAGTCAGAG CGTGTTGCTT CAGAACAAAC TGGTGAATAG 
    CTGCAACAGT TCCTTCAAGG AAAAGAAGAA CAGTAATGGT CAGATTCAAA 
    AGGTGACCAA TAATAAGAAG AGTTTTCTCG CAAATTTGGG GTGTAAATGC 
    GCATGCTCTG ATGGGGATTC TGTAGATGTC GAGGAGAAAA CCTCGGTCAA 
    GAGAAGCGCT GATCCGAATA TCTCTGTTAT CACAATGAGA TCTTCTGCGG 
    ATATGAACAC AGAACTGATC AAGATTCAGA AGCAAGAGGA GTTATCACAG 
    AGGAAGTCTC TTGAAGTTTT TGGATCTCCA GTGGCTATTG AGAAGAAGAG 
    TAGTGTTGTT CAGAAGAAAC TACCATTGCC TCCATGGAAA TCGAGAACAG 
    AGGAGGACGA CACAAAGAGT GAAGGGAGTG ATTCAAGCTC GGATCTTTTC 
    GAGATAGAGG GTCTTACAGG GAACCCTAAA CCTTTTCTTA CGAGGCAAGG 
    AAGTGATCCA GCTTCACCTA CGTGTTATGC GCCAAGTGAA GTAAGCGTAG 
    AGTGGAGCAT AGTGACAGCA AGTGCAGCAG ATTTCTCTGT TATGTCAGAA 
    TGTGCAACAA GTCCTGTAAG AAGAAACCGA CCTACTCAGA TTCCTCGAAT 
    CCCTATTACC GCTAAATCAG CACCGCAGAG ACGGAAATCG AGTAGCAGCA 
    GCGGAGGGAA TGGTTTCTTG ATGAGCTGCA AGAGTCATAA ATCTGTTATG 
    GTTTCTGGTG ATTTAGACAG AAGAAGCAGC ATGAACAAGA CACAACCGAG 
    TTACGTTCCT AGATTCCCAA TGGAGACTAC TAAACCTAAG AGTTTCGAAA 
    CACGAAGAAG GATCAGCAAC AGCTCGATTT CTCACACACA ATCATCTCTT 
    CTTTATAGTC AGTGATTGCA AGAAAGTAAA AGAAAAAGAT TTCAATCTCT 
    GATCTCTCTT TATCTATAAT TTCTACTGAG TGAGAAAGAT ATGTAAACTT 
    ATAATAATGT CTTGTTGAGT CCATGATCAA ATCAATTTAA AAGGGTTTCT 
    TAGAGACCTT TTGCACC

    Gene models with high sequence identity

    1. AT2G02950.1 [+] show detail - phytochrome kinase substrate 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G02950.1

    Model type
    Protein coding
    Short Description
    phytochrome kinase substrate 1
    Curator Summary
    Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.
    Computational Description
    phytochrome kinase substrate 1 (PKS1); BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 2 (TAIR:AT1G14280.1); Has 564 Blast hits to 331 proteins in 102 species: Archae - 0; Bacteria - 114; Metazoa - 82; Fungi - 26; Plants - 127; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR