F28621

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	increased width (PATO:0000600) (Cauline leaf::Shape::wide)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) dark green (PATO:0001249) (Cauline leaf::Color::dark) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28621

Determination of introduced cDNA(s)

RAFL09-12-B06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-B06 - Resource: pda01622

full reading [+] show sequence

AAGTCCTTGT CCTTCCTTCC TCAATCAAAC AACACCTTCT TTAATCCAGA 
ACAAAAAAAA ACAAACAGAA GAAAAAAAAA AAAAAAAACT ACAAAAAAAA 
AATCTCTGCC CGCTTCTCCG TTCTCGGGGT TGCGTCAAAA TTGCACCAAA 
TTAATCAAAA CCTACCCAGA AATCATTTTT GGTCACAGGG GATAGGCGGG 
CAGATTTAAA TTTTCTTCTT TTGTTCTTCT GTTTGAATTT GTATTGATTC 
GTGAAATTGT GTTTGTTTGA TGGGGTTTTT GGTGGATACG CAAAAGGAAG 
GAGGTGGACA TTCATGGGGT TACGTTAGAA GTTTGGTTAG AAGGAAACAA 
GTCGACTCTG CTAATGGCCA ATCTCATGGT CACCAACTTG CTAGAGCCCT 
CACTGTTCCT CATCTCGTTG CAATTGGTGT TGGAGCAACA ATAGGAGCTG 
GAGTTTATAT TCTTGTAGGA ACAGTTGCGA GAGAGCATTC AGGACCTTCT 
CTTGCTTTGT CTTTTCTTAT TGCTGGAATT GCTGCTGGTC TTTCTGCGTT 
TTGTTATGCT GAACTCTCTA GTCGTTGCCC TTCAGCTGGG AGTGCGTATC 
ACTATTCTTA CATTTGTGTT GGTGAAGGTG TTGCGTGGAT AATCGGTTGG 
GCGTTGATTC TGGAGTATAC CATTGGTGGC TCAGCTGTTG CCCGTGGCAT 
ATCCCCTAAT CTGGCACTGA TTTTTGGTGG TGAAGATGGT TTGCCTGCAA 
TTTTAGCGCG CCACCAGATC CCAGGCCTTG ATATTGTTGT TGATCCATGT 
GCTGCTATTC TTGTGTTTGT TGTAACTGGC CTTTTGTGCA TGGGAATAAA 
GGAGAGCACA TTTGCTCAGG GAATTGTAAC TGCAGTCAAT GTGTGTGTCC 
TGTTATTTGT CATAGTAGCT GGCAGTTATC TCGGCTTCAA GACAGGTTGG 
CCTGGTTATG AACTTCCAAC AGGGTTCTTT CCATTCGGAG TAGATGGAAT 
GTTTGCTGGT TCTGCTACAG TCTTTTTTGC ATTCATTGGG TTTGATTCGG 
TTGCAAGTAC CGCAGAGGAG GTGAGAAATC CCCAACGGGA TTTACCGATT 
GGTATTGGTC TTGCTCTCTT GTTATGTTGT TCTCTCTACA TGATGGTCTC 
CATAGTTATT GTTGGTTTAA TTCCTTACTA TGCAATGGAT CCCGACACCC 
CGATATCCTC TGCATTCGCT AGTCATGACA TGCAATGGGC TGTATACTTA 
ATAACTTTAG GAGCTGTCAT GGCACTCTGC TCAGCTTTAA TGGGTGCCCT 
TCTCCCTCAG CCACGAATTC TGATGGCAAT GGCTAGGGAT GGTCTGCTCC 
CTTCTATTTT TTCAGACATT AATAAACGCA CACAGGTTCC GGTTAAAGCA 
ACAGTGGCAA CTGGGTTGTG TGCTGCAACC TTAGCGTTCT TTATGGATGT 
TTCACAGCTT GCAGGGATGG TGAGTGTTGG GACACTTCTG GCATTTACAA 
TGGTGGCAAT ATCAGTGTTG ATACTAAGAT ATGTTCCTCC AGATGAGCAA 
CCTCTTCCGT CATCTCTTCA AGAGAGAATT GATTCTGTTT CCTTTATATG 
TGGTGAAACA ACGTCATCCG GTCATGTTGG TACTTCCGAT AGCAGTCACC 
AGCCTTTAAT AGTTAATAAT GATGCTTTGG TCGATGTCCC ACTTATCAAG 
AATCAAGAAG CTCTAGGGTG TTTGGTTCTC AGCGAGGAAA CCAGAAGGAT 
TGTCGCTGGA TGGAGCATTA TGTTCACATG TGTTGGGGCC TTCCTTTTAA 
GTTATGCGGC ATCAAGCCTG AGCTTCCCAG GGCTTATTAG ATATCCGTTG 
TGTGGTGTTG GTGGATGTCT CCTCCTTGCT GGTTTGATTG CTCTGAGTTC 
CATAGATCAG GATGATGCGA GACACACTTT TGGACATTCT GGAGGTTACA 
TGTGCCCGTT TGTTCCCCTC CTACCTATCA TCTGCATTCT CATCAACATG 
TACCTTTTGG TTAACCTTGG ATCTGCGACA TGGGCTCGTG TATCGGTGTG 
GCTGCTTATA GGAGTGATTG TGTATGTTTT CTATGGTCGG AAAAACAGTT 
CGCTTGCCAA TGCAGTTTAC GTAACTACAG CTCATGCGGA GGAGATATAT 
CGCGAACATG AAGGTTCTTT GGCATAGTCT GAGAAAGCAG CATCTCTTTT 
GTTATATATG TAACACAAAT CTGTATTATC TTTATCTGGA TGTAACAGCA 
AGAGTGGCAC TATCTATTTG TTTGCAAAAA GATCTGTCCA CGGCCTTTGT 
AAATAATATA TATCATCATC AATTCGT

Gene models with high sequence identity

AT1G58030.1 [+] show detail - cationic amino acid transporter 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Amino acid permease domain	7e-37
HMMPanther	Cationic amino acid transporter	1.2e-264
HMMPanther	Amino acid/polyamine transporter I	1.2e-264
HMMPIR	Amino acid/polyamine transporter I	6.2e-72

See the detailed result >

AT1G58030.1

Model type: Protein coding
Short Description: cationic amino acid transporter 2
Curator Summary: Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.
Computational Description: cationic amino acid transporter 2 (CAT2); FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 3 (TAIR:AT5G36940.1); Has 37076 Blast hits to 34712 proteins in 2307 species: Archae - 552; Bacteria - 29543; Metazoa - 2357; Fungi - 2838; Plants - 508; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).
Link: InterPro Scan - TAIR