F28827

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28827

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28827

Determination of introduced cDNA(s)

RAFL09-79-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-79-N19 - Resource: pda09917

full reading [+] show sequence

ACCAATCTCT CACAAGTCAC AACATATCCA TTTTCCAGGA AGCTTTGGAA 
GCACATGATG GAGCAAGTAA AGGGAAATAC ACTATTGGAC TTGGCCAAGA 
TTGTTTAGCT TTTTGCACTG AGCTTGAAGA TGTTATCTCT ATGAGTTTCA 
ATGCGGTGAC ATCACTTTTT GAGAAGTATA AGATTGACCC TAACCAAATC 
GGGCGTCTTG AAGTAGGAAG TGAGACTGTT ATTGACAAAA GCAAGTCCAT 
CAAGACCTTC TTGATGCAGC TCTTTGAGAA ATGTGGAAAC ACTGATGTCG 
AAGGTGTTGA CTCGACCAAT GCTTGCTATG GTGGAACTGC AGCTTTGTTA 
AACTGTGTCA ATTGGGTTGA GAGTAACTCT TGGGATGGAC GTTATGGCCT 
CGTCATTTGT ACTGACAGCG CGGTTTATGC AGAAGGACCC GCAAGGCCCA 
CTGGAGGAGC TGCAGCGATT GCTATGTTGA TAGGACCTGA TGCTCCTATC 
GTTTTCGAAA GCAAATTGAG AGCAAGCCAC ATGGCTCATG TCTATGACTT 
TTACAAGCCC AATCTTGCTA GCGAGTACCC GGTTGTTGAT GGTAAGCTTT 
CACAGACTTG CTACCTCATG GCTCTTGACT CCTGCTATAA ACATTTATGC 
AACAAGTTCG AGAAGATCGA GGGCAAAGAG TTCTCCATAA ATGATGCTGA 
TTACATTGTT TTCCATTCTC CATACAATAA ACTTGTACAG AAAAGCTTTG 
CTCGTCTCTT GTACAACGAC TTCTTGAGAA ACGCAAGCTC CATTGACGAG 
GCTGCCAAAG AAAAGTTCAC CCCTTATTCA TCTTTGACCC TTGACGAGAG 
TTACCAAAGC CGTGATCTTG AAAAGGTGTC ACAACAAATT GCGAAACCGT 
TTTATGATGC TAAAGTGCAA CCAACGACTT TAATACCAAA GGAAGTCGGT 
AACATGTACA CTGCTTCTCT CTACGCTGCA TTTGCTTCCC TCATCCACAA 
GAAACACAAT GATTTGGCGG GAAAGCGGGT GGTTATGTTC TCTTATGGAA 
GTGGCTCAAC CGCAACAATG TTCTCATTAC GCCTCAACGA CAATAAGCCT 
CCTTTCAGCA TTTCAAACAT TGCATCTGTA ATGGATGTTG GCGGTAAATT 
GAAAGCTAGA CATGAGTATG CACCTGAGAA GTTTGTGGAG ACAATGAAGC 
TAATGGAACA TAGGTATGGA GCAAAGGACT TTGTGACAAC CAAGGAGGGT 
ATTATAGATC TTTTGGCACC GGGAACTTAT TATCTGAAAG AGGTTGATTC 
CTTGTACCGG AGATTCTATG GCAAGAAAGG TGAAGATGGA TCTGTAGCCA 
ATGGACACTG ATTCTTGAAA AGGAACAAAT CATAAAAAGT CACCTGAAAA 
TGTTATGTTT TACTTGCACC ATTTTAATCG TTTTATAAGT TTGTTGTTAC 
TTTGATTTAG GGACAAAGAA GGAATGTATT CTCTGTTTTT ATTTACTGTT 
TGATTTACTC TCTCATGCAA ATGATAATTT GGAAATTATT GGAATCTCTA 
TTTTGTATGT TTGTGTTCTT

Gene models with high sequence identity

AT4G11820.1 [+] show detail - hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A syn...
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Hydroxymethylglutaryl-coenzyme A synthase, active site	0
HMMTigr	Hydroxymethylglutaryl-CoA synthase, eukaryotic	0
superfamily	Thiolase-like	6.9e-62
superfamily	Thiolase-like	2.4e-26
HMMPanther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	5.8e-221
HMMPfam	Hydroxymethylglutaryl-coenzyme A synthase C-terminal	3.4e-121
HMMPfam	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	7.5e-71

See the detailed result >

AT4G11820.1

Model type: Protein coding
Short Description: hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Curator Summary: Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.
Computational Description: HYDROXYMETHYLGLUTARYL-COA SYNTHASE (HMGS); CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-coenzyme A synthase C-terminal (InterPro:IPR013746), Thiolase-like (InterPro:IPR016039), Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (InterPro:IPR013528), Hydroxymethylglutaryl-CoA synthase, eukaryotic (InterPro:IPR010122), Hydroxymethylglutaryl-coenzyme A synthase, active site (InterPro:IPR000590); Has 2141 Blast hits to 2138 proteins in 847 species: Archae - 222; Bacteria - 1037; Metazoa - 301; Fungi - 182; Plants - 116; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).
Link: InterPro Scan - TAIR