F28910

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28910

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28910

Determination of introduced cDNA(s)

  • RAFL05-11-O04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-O04 - Resource: pda09311

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-O04 - full reading 
    TGCCACTCAT TTTTCCTATT TTTCGCTTTG CGTGCCTTCT TATCAACTTG 
    TAAACAAAGC TACAAATATC TTTAAATAAG GACCCAACTC TTTTTCAATT 
    CCTCCCATCA ATCTTCTTCA TTTGTTCTTC TGTTGGTGGT GGTGATCTAG 
    TTTTCAAAGA ATCGATTTTG CCAAGTGGGT TCTTCTTGAT AACCTTTCTT 
    CTTCTTTGAA ATGGGTTCTT CTGTGGAGCA GAACATTCTT GTTACTGGTG 
    GTGCTGGCTT TATCGGGACG CATACTGTTG TTCAACTTCT CAAAGATGGT 
    TTTAAGGTTT CGATCATCGA TAATTTTGAT AACTCTGTTA TCGAAGCTGT 
    TGATAGAGTT AGGGAGCTTG TTGGTCCTGA TCTCTCCAAG AAGCTCGACT 
    TCAATCTGGG TGATCTAAGA AACAAAGGGG ACATTGAGAA ACTATTCTCC 
    AAGCAGAGAT TTGATGCTGT GATTCATTTT GCGGGTCTTA AAGCTGTGGG 
    TGAGAGTGTT GAAAACCCTC GCCGCTACTT TGACAATAAC TTGGTTGGAA 
    CAATCAATCT ATATGAGACC ATGGCAAAGT ACAACTGCAA AATGATGGTG 
    TTTTCATCTT CTGCCACTGT TTATGGACAA CCTGAAAAGA TTCCATGCAT 
    GGAAGACTTT GAATTAAAGG CTATGAATCC TTATGGTCGT ACTAAGCTCT 
    TTCTTGAAGA AATAGCTAGA GATATTCAAA AGGCAGAACC GGAATGGAGA 
    ATTATTCTGC TGAGGTACTT CAATCCTGTA GGAGCACATG AGAGTGGCAG 
    TATTGGTGAG GATCCAAAAG GCATCCCCAA TAACCTCATG CCTTACATCC 
    AACAAGTGGC CGTTGGACGT TTACCGGAAC TCAATGTCTA TGGACATGAC 
    TATCCCACCG AGGATGGTAG TGCGGTAAGA GACTACATCC ATGTGATGGA 
    TTTAGCAGAT GGCCATATCG CTGCGCTCAG GAAGCTATTT GCTGATCCAA 
    AGATTGGTTG TACTGCTTAC AATCTAGGGA CTGGTCAAGG AACGTCTGTG 
    TTAGAAATGG TTGCAGCTTT TGAAAAAGCT TCCGGCAAGA AAATCCCGAT 
    TAAGCTCTGT CCGAGAAGGT CAGGAGATGC AACAGCAGTT TATGCTTCAA 
    CAGAGAAGGC TGAGAAAGAA CTTGGCTGGA AGGCAAAATA TGGAGTGGAT 
    GAGATGTGCA GAGATCAGTG GAAATGGGCA AACAATAATC CATGGGGTTA 
    CCAGAATAAG CTTTGAATTT ACTTCTTTTG TTTGGAGTTA CCATTTCTAA 
    TTACTCAAAT CTAAAAGAAA GAAATATACA TACATATGAT GATATAGTTG 
    TGCTTTATAT TCCACATGTA TCGAACTGAT CTCTTACTTC GATGAATAAA 
    ATGGAAAGTT GATTTGATTG

    Gene models with high sequence identity

    1. AT1G12780.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UDP-glucose 4-epimerase 2.3e-190
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 2.3e-190
    HMMPfam NAD-dependent epimerase/dehydratase 3.8e-50
    Gene3D NAD(P)-binding domain 3.5e-61
    FPrintScan Nucleotide sugar epimerase 0.000085
    FPrintScan Nucleotide sugar epimerase 0.000085
    FPrintScan Nucleotide sugar epimerase 0.000085
    HMMTigr UDP-glucose 4-epimerase 1.3e-169
    superfamily NAD(P)-binding domain 1.4e-102

    See the detailed result >

    AT1G12780.1

    Model type
    Protein coding
    Short Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1
    Curator Summary
    Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.
    Computational Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress, galactose biosynthetic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (TAIR:AT1G63180.1); Has 42430 Blast hits to 42420 proteins in 2995 species: Archae - 799; Bacteria - 25009; Metazoa - 650; Fungi - 500; Plants - 1081; Viruses - 38; Other Eukaryotes - 14353 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR