F29017

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29017

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29017

Determination of introduced cDNA(s)

  • RAFL09-93-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-93-C24 - Resource: pda06976

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-93-C24 - full reading 
    ACCACATATA GTCTCTCCTC AACTCTCCAG AGAAGTTCTT AATTTCTCCT 
    GCCAAGCTGA TTAAGAGCTC TAGGAAATGG CCGAACAACA ACTAGGAGTG 
    CTAAAGGCAC TCGATGTTGC GAAGACGCAA CTTTATCATT TCACGGCGAT 
    TGTCATCGCC GGTATGGGTT TCTTTACCGA TGCCTACGAT CTTTTTTGCG 
    TGTCCTTGGT GACGAAACTC CTTGGCCGCA TCTACTATTT CAATCCGGAG 
    TCAGCGAAGC CTGGCTCACT TCCCCCTCAT GTTGCGGCCG CGGTCAACGG 
    TGTGGCCCTT TGTGGAACCC TTTCTGGTCA ACTCTTCTTC GGTTGGCTCG 
    GTGACAAACT CGGACGGAAA AAAGTGTACG GTCTCACTTT GGTAATGATG 
    ATCTTGTGCT CTGTCGCTTC TGGTCTCTCT TTTGGCCACG AAGCCAAGGG 
    TGTCATGACC ACCCTTTGCT TCTTCAGGTT TTGGTTGGGA TTTGGTATTG 
    GAGGTGACTA CCCACTTTCT GCCACCATCA TGTCTGAATA CGCAAACAAG 
    AAGACCCGTG GGGCTTTCAT CGCAGCTGTC TTCGCCATGC AAGGTGTCGG 
    TATCTTGGCT GGAGGTTTCG TGGCACTCAC AGTATCTTCT ATATTCGACA 
    AAAAGTTCCC AGCTCCAACA TATGCAGTAA ACAGGGCCCT CTCAACGCCT 
    CCTCAAGTTG ACTACATTTG GCGAATCATC GTCATGTTTG GTGCTTTACC 
    CGCAGCTTTG ACTTACTACT GGCGTATGAA GATGCCTGAA ACTGCCCGTT 
    ACACCGCTTT GGTTGCCAAG AACATCAAAC AAGCCACAGC CGACATGTCC 
    AAGGTCTTAC AAACAGATAT CGAGCTTGAG GAAAGGGTGG AGGATGACGT 
    CAAAGACCCC AAACAAAACT ATGGCTTGTT CTCCAAGGAA TTCCTTAGAC 
    GCCATGGGCT TCATCTCCTT GGAACTACCT CCACATGGTT TTTGCTTGAC 
    ATTGCCTTCT ACAGCCAAAA CTTGTTCCAG AAGGATATTT TCTCGGCCAT 
    CGGATGGATC CCAAAGGCAG CCACCATGAA CGCCACCCAT GAGGTTTTCA 
    GGATTGCTAG GGCTCAGACT CTTATCGCCC TTTGCAGTAC AGTCCCAGGC 
    TACTGGTTCA CAGTTGCGTT TATTGATACC ATTGGAAGGT TTAAGATCCA 
    ACTAAATGGA TTTTTCATGA TGACCGTGTT TATGTTTGCC ATTGCCTTCC 
    CTTACAACCA CTGGATCAAA CCAGAAAACC GTATCGGATT TGTGGTTATG 
    TACTCTCTTA CTTTCTTCTT CGCCAATTTT GGTCCAAATG CAACCACTTT 
    TATTGTCCCT GCTGAGATAT TCCCGGCCAG GCTAAGGTCT ACATGTCATG 
    GAATATCAGC CGCGGCTGGT AAGGCTGGAG CCATTGTTGG AGCCTTTGGG 
    TTCCTATATG CGGCTCAATC ACAAGACAAG GCCAAGGTAG ACGCAGGATA 
    CCCACCAGGC ATCGGAGTTA AGAACTCATT GATCATGCTT GGTGTTCTTA 
    ACTTTATCGG TATGCTCTTC ACCTTCCTTG TCCCAGAGCC CAAAGGCAAG 
    TCCCTTGAAG AACTCTCTGG TGAGGCTGAG GTTAGCCATG ACGAGAAATA 
    ATTATGTATG TTTATTTTGT TATTTGGAGT GCGATGTTTG GTTTTGTTTT 
    CATTTTATTG GCTCGTTGAC CTTAAGTTAT GATGTTATAA GAATATTTAT 
    GATATCATTT AAATCTTGTC TAATAAGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT5G43350.1 [+] show detail - phosphate transporter 1;1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1e-58
    HMMPanther INORGANIC PHOSPHATE TRANSPORTER 9.8e-250
    HMMPanther SUGAR TRANSPORTER 9.8e-250
    HMMPfam General substrate transporter 4.2e-44
    HMMTigr Phosphate permease 0
    ProfileScan MFS 28.413

    See the detailed result >

    AT5G43350.1

    Model type
    Protein coding
    Short Description
    phosphate transporter 1;1
    Curator Summary
    Encodes an inorganic phosphate transporter Pht1;1. Mutants display enhanced arsenic accumulation. Members of the Pht1 family of phosphate transporters include: Pht1;1/At5g43350, Pht1;2/At5g43370, Pht1;3/At5g43360, Pht1;4/At2g38940, Pht1;5/At2g32830, Pht1;6/At5g43340, Pht1;7/At3g54700, Pht1;8/At1g20860, Pht1;9/At1g76430 (Plant Journal 2002, 31:341).
    Computational Description
    phosphate transporter 1;1 (PHT1;1); FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, inorganic phosphate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: cellular response to phosphate starvation, phosphate transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Phosphate permease (InterPro:IPR004738), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 2 (TAIR:AT5G43370.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR