F29203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29203

Determination of introduced cDNA(s)

  • RAFL19-64-P10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-64-P10 - Resource: pda11415

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-64-P10 - full reading
    CTTATCCTTC TCCTCGTGAA GACTTTTCTC TCTGTTTATT TTTTTTAGGG 
    TTTTCGTAAG AACAGAGCAA AAAACATGTT TGGAAGAGGA CCTTCAAGGA
    AGAGCGATAA CACAAAGTTC TACGAGATCC TTGGTGTTCC TAAGACCGCA
    GCACCAGAAG ATCTCAAGAA AGCTTATAAG AAAGCCGCTA TCAAAAACCA
    TCCTGATAAG GGTGGTGATC CCGAAAAGTT TAAAGAGTTA GCACAGGCTT
    ATGAAGTTTT AAGTGATCCT GAGAAGCGTG AGATCTATGA TCAATATGGG
    GAAGATGCAC TCAAGGAAGG AATGGGTGGT GGAGGTGGTG GACACGATCC
    ATTTGATATC TTCTCTTCCT TCTTTGGTAG TGGTGGACAC CCATTCGGAA
    GTCATAGCCG GGGAAGGAGG CAGAGGCGTG GTGAAGATGT TGTTCATCCC
    TTGAAGGTTT CCTTAGAGGA TGTTTATCTC GGAACAACAA AGAAGCTCTC
    ACTTTCTAGG AAGGCTTTGT GCTCAAAGTG TAACGGCAAG GGTTCAAAGT
    CTGGAGCTTC AATGAAATGT GGTGGCTGTC AAGGTTCGGG AATGAAGATC
    TCGATCAGGC AGTTTGGACC TGGGATGATG CAGCAGGTGC AGCATGCTTG
    TAATGATTGC AAAGGCACAG GAGAGACCAT CAATGATCGG GACAGGTGTC
    CACAATGCAA AGGAGAGAAG GTTGTCTCTG AGAAGAAGGT GCTTGAAGTA
    AATGTGGAGA AGGGAATGCA ACACAATCAG AAGATCACAT TCAGTGGACA
    AGCCGATGAA GCGCCTGATA CTGTCACCGG AGATATAGTG TTTGTCATTC
    AGCAGAAGGA GCACCCAAAG TTCAAAAGAA AGGGTGAGGA TCTCTTTGTG
    GAGCACACCA TCTCTCTAAC CGAGGCCTTG TGTGGCTTCC AGTTTGTCTT
    GACCCATTTG GACAAAAGAC AGCTTCTCAT CAAATCCAAG CCCGGAGAGG
    TCGTCAAACC TGATTCATAC AAGGCGATAA GTGATGAGGG AATGCCAATA
    TACCAAAGGC CGTTCATGAA GGGTAAGCTA TACATTCACT TCACGGTTGA
    ATTCCCGGAA TCGCTGAGCC CGGATCAGAC AAAGGCCATT GAAGCAGTTT
    TGCCAAAGCC AACCAAGGCA GCTATAAGCG ATATGGAAAT AGACGACTGC
    GAAGAGACGA CTCTGCATGA TGTGAACATT GAGGATGAGA TGAAAAGGAA
    GGCGCAAGCT CAAAGAGAGG CTTATGATGA CGATGAGGAA GATCACCCAG
    GCGGTGCTCA GCGTGTGCAA TGTGCCCAGC AGTGATCAAC ATGCGCATCT
    TAGTGATCTC CAATATTTGC TTCTGTCTTT TCTCCTTTTC ATTGTATTAT
    TTTTGGGTCT TTTTATAGAC TTTGCCAATT CAGTGGGAAG AACCTCGTCC
    T

    Gene models with high sequence identity

    1. AT5G22060.1 [+] show detail - DNAJ homologue 2
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Heat shock protein DnaJ, conserved site 0
    Coil coiled-coil 0
    Gene3D Heat shock protein DnaJ, N-terminal 2.5e-21
    Gene3D no description 1.8e-24
    Gene3D no description 1.8e-26
    HMMSmart Heat shock protein DnaJ, N-terminal 4.2e-25
    superfamily Heat shock protein DnaJ, N-terminal 2.3e-35
    superfamily HSP40/DnaJ peptide-binding 6.9e-22
    superfamily HSP40/DnaJ peptide-binding 1.1e-18
    superfamily Heat shock protein DnaJ, cysteine-rich domain 3e-18
    ProfileScan Heat shock protein DnaJ, N-terminal 22.913
    ProfileScan Heat shock protein DnaJ, cysteine-rich domain 23.668
    HMMPanther HSP40, SUBFAMILY A, MEMBERS 1,2,4 3.6e-197
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.6e-197
    HAMAP Chaperone DnaJ 24.354
    HMMPfam Chaperone DnaJ, C-terminal 1.1e-28
    HMMPfam Heat shock protein DnaJ, N-terminal 9.8e-24
    HMMPfam Heat shock protein DnaJ, cysteine-rich domain 1.6e-17
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54
    FPrintScan Heat shock protein DnaJ 4.8e-54

    See the detailed result >

    AT5G22060.1

    Model type
    Protein coding
    Short Description
    DNAJ homologue 2
    Curator Summary
    Co-chaperonin similar to E. coli DnaJ
    Computational Description
    DNAJ homologue 2 (J2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 3 (TAIR:AT3G44110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR