F29224

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29224

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29224

Determination of introduced cDNA(s)

  • RAFL09-11-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-M18 - Resource: pda01767

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-M18 - full reading
    AACAGCAACG GGAATTTTCA TGGCGGCGAG GTCACCGGAC GTTATATAAT 
    TTGTATCCCA AATCAAAATT CTGAGAAGGA AGAGAAAGCA ATGGAGGACG
    AATTGGAAGG TCTACGAGCT CATTTTCCTG TTTCGTTCGG TAAGACATCG
    AAGGTTTCGG CGTCAACTGA AGCCATTCAC AGCGCAACTC GCCGCACCGA
    TGTAGCCAAC GACGCCGGAG TTTCGTCGGA TATCACCACG AAGAAACCTG
    ATTCCGATAA ATCTGGATTC CCGTCTCTAT CTTCCTCATC TCAAACCTGG
    CTCCGAAGTG TTCGCGGTCC GAATCGTAAC CCTAACAGCT CCGGTGATGT
    AGCAATGGGT CCGCCACCGC CACCGTCATC TAAACGGACG CAAGAGGAAG
    AGGAGGAGGA TGAAGAAGTT ATGATGGGAC CACCGCCACC GCCTAAGGGA
    CTCGGGAACA TTAATGATTC TGATGATGAG GGGGATATGA TCGGTCCTCC
    GCCGCCGCCT CCTGCTGCTC GAGATTCAGA TGAAGATTCA GATGACGATG
    ATGATAATGA CAACGAGGAG AATCGTTACC AGATTCCATT GAGCAACGAG
    ATTCAGCTTA AGGGACATAC AAAGATTGTT TCATCTCTCG CTGTTGATAG
    TGCTGGAGCT AGAGTTCTTT CAGGAAGCTA TGACTACACT GTGAGAATGT
    ACGATTTCCA AGGGATGAAT TCGAGACTAC AGTCTTTTAG ACAGATAGAG
    CCATCTGAGG GACACCAAGT TCGCAGCGTG AGCTGGAGTC CCACTTCTGG
    TCAATTTCTA TGCGTTACTG GCTCTGCACA AGCTAAGATT TTTGATCGAG
    ATGGTCTTAC TCTTGGTGAG TTTATGAAAG GAGATATGTA TATTCGTGAT
    CTGAAGAACA CTAAGGGACA TATTTGTGGG TTGACCTGTG GAGAATGGCA
    TCCGAGGACT AAGGAAACCG TTCTGACTTC GTCGGAAGAC GGGTCTTTGC
    GTATATGGGA TGTTAATAAC TTCCTAAGCC AAACGCAGGT TATTAAGCCT
    AAGCTTGCTA GACCAGGGAG GGTTCCAGTT ACAACCTGTG CTTGGGACCG
    TGACGGAAAG CGTATCGCCG GTGGTGTAGG AGATGGATCT ATACAGATTT
    GGAGTCTCAA GCCGGGATGG GGAAGCCGAC CAGATATATA CGTTGGGAAG
    GCCCACACTG ATGATATAAC CTCTGTAAAG TTCTCTAGCG ATGGCAGAAT
    TCTGTTGTCA AGGAGTTTTG ATGGTTCTCT GAAGGTCTGG GACTTGCGGC
    AGATGAAAGA AGCTCTAAAA GTTTTCGAGG GTCTACCTAA TTATTATCCT
    CAAACCAACG TTGCCTTTAG TCCAGACGAA CAAATCATCC TGACTGGAAC
    ATCCGTCGAG AAAGACAGCA CAACAGGAGG CTTGCTATGT TTCTACGATC
    GCACCAAACT AGAGATAGTT CAAAAAGTCG GAATCTCTCC AACTTCCAGC
    GTGGTGCAAT GCGCTTGGCA CCCGAGGTTG AATCAGATAT TTGCAACATC
    CGGAGACAAA AGCCAAGGAG GGACTCACAT TCTTTACGAC CCAAGTCAGA
    GCGAGAGAGG CGCATGCGTC TGTGTTGCAC GTGCACCAAG GAAGAAATCT
    GTAGATGATT ACCAACCAGA ACCAGTAATA CACAATCCTC ATGCATTACC
    ATTGTTCAGA GACGCACCAA GCCGTAAACG AGAAAGAGAG AAAGCATTGA
    AGGATCCAAT GAAATCCCAC AAGCCTGAGA TACCCATGAC AGGTCCTGGT
    CATGGTGGAA GAGTTGGGAC TACTGGTAGT GGCTTATTAA CACAATATCT
    TCTCAAGCAA GGTGGGATGA TAAAAGAGAC GTGGATGGAA GAAGATCCAA
    GAGAAGCAAT ATTGAAATAC GCAGAGGTTG CTGTTAAAGA TCCAAAGTTT
    ATTGCACCTG CTTACTCTCA GACCCAGCCT AAGACCATCT TCGCTAAATC
    TGATGACGAA GAAGAAGAAG GTGACACTAA AAAATAATTA GAGTTTTTCA
    AATTCAACGA CCGTTTCCTT GTATTCTGTA TAATGTTATC ATATCGTGGC
    ACTTTAGAAT ATACTGAAAG AACACATTCA TCCCCGAATT GCATTTTTGC

    Gene models with high sequence identity

    1. AT2G20330.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam WD40 repeat, subgroup 2.2e-05
    HMMPfam WD40 repeat, subgroup 0.46
    HMMPfam WD40 repeat, subgroup 0.00032
    HMMPfam WD40 repeat, subgroup 0.0011
    HMMPfam WD40 repeat, subgroup 2.4e-08
    HMMPfam WD40 repeat, subgroup 1.9
    Coil coiled-coil 0
    HMMPanther GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2.9e-140
    PatternScan WD40 repeat, conserved site 0
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
    Gene3D WD40/YVTN repeat-like-containing domain 3.6e-52
    ProfileScan WD40 repeat 2 11.444
    ProfileScan WD40 repeat 2 10.943
    ProfileScan WD40 repeat 2 8.904
    ProfileScan WD40 repeat 2 15.421
    ProfileScan WD40-repeat-containing domain 28.159
    superfamily WD40 repeat-like-containing domain 9.8e-61
    HMMSmart WD40 repeat 6.1e-05
    HMMSmart WD40 repeat 2.8
    HMMSmart WD40 repeat 0.0065
    HMMSmart WD40 repeat 0.35
    HMMSmart WD40 repeat 3e-07
    HMMSmart WD40 repeat 76

    See the detailed result >

    AT2G20330.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 32306 Blast hits to 19564 proteins in 654 species: Archae - 48; Bacteria - 6195; Metazoa - 11628; Fungi - 6530; Plants - 3814; Viruses - 23; Other Eukaryotes - 4068 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR