F29410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29410

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29410

Determination of introduced cDNA(s)

  • RAFL07-11-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-H07 - Resource: pda04134

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-H07 - full reading 
    CTCTTCTCTC TTTTCTCCTT TGCCTTCTTC CTCTCCGAGA GAAGTTGACT 
    TGTGAAAAGT CTGCGAGTGA CTTCTTCCTG TTTACACATC AGCTACTCCA 
    GAATCTCTCA GATTCTTAAA AGCTTAAATC TTTTTTCGAC TTTGATTGTT 
    TCTGTGCATC GCTTTGACGG ATGTGGAGGA AAAAAGGGGT GTCTTGATGA 
    AATGAGGGAT GTTATCAACG TTAATGAAAC TCTTGAGTGC TTGTCTGTGG 
    CCGTCTTCTT CCTCGGGCAA GTCCTCTGAT TCAACTGGAA AACAAGATGG 
    ATTGCTTTGG TACAAAGACT TTGGTCAGCA CCTCGTTGGT GAATTCTCCA 
    TGGCTGTTGT TCAAGCCAAC AACTTGCTTG AGGATCAGAG CCAAGTTGAG 
    TCTGGGCCTT TGAGTACTCT TGACTCTGGT CCTTATGGAA CTTTTATTGG 
    AATCTATGAT GGCCATGGCG GGCCTGAGAC GTCGCGATTT GTTAATGATC 
    ACCTTTTTCA GCATCTAAAG AGTGAGGAAA CTGAATGATA TATGCATACC 
    AGGTTACAAA CCAACCGTGC GGAAACTAAA ATCTTGTTTG AATTTTCAGG 
    ATTTGCTGCA GAGCAGGCCT CTATGTCGGT GGATGTAATT AAAAAGGCGT 
    ATGAGGCGAC AGAAGAAGGT TTTTTAGGGG TTGTGACAAA GCAGTGGCCA 
    ACTAAGCCAC AGATTGCAGC GGTTGGGTCT TGCTGCTTGG TGGGTGTTAT 
    ATGCGGAGGG ATGCTTTACA TAGCTAATGT TGGGGATTCC CGTGCAGTTC 
    TTGGAAGGGC TATGAAGGCG ACAGGTGAGG TTATTGCCCT TCAGCTCTCT 
    GCTGAACATA ATGTGAGTAT AGAGTCTGTT AGACAGGAGA TGCACTCCTT 
    GCACCCAGAT GACTCGCATA TTGTCATGTT AAAGCACAAT GTGTGGCGTG 
    TTAAGGGCCT TATTCAGATA TCTAGATCCA TAGGCGACGT GTATCTTAAA 
    AAGGCAGAGT TCAACAAGGA ACCATTGTAC ACAAAGTATA GAATCCGTGA 
    ACCGTTCAAA AGACCTATCT TGAGTGGGGA ACCAACGATA ACGGAGCATG 
    AGATCCAACC ACAAGATAAG TTTCTAATAT TCGCTTCTGA TGGACTATGG 
    GAACAGATGA GCAACCAAGA AGCTGTTGAC ATCGTTCAGA ACCACCCACG 
    AAACGGGATT GCACGGAGAC TGGTGAAGAT GGCACTGCAA GAGGCGGCAA 
    AGAAACGAGA GATGAGATAT TCTGATCTAA AGAAGATAGA GAGAGGTGTG 
    AGGAGACATT TCCACGATGA CATAACTGTG GTCATAATCT TCCTTGATAC 
    CAATCAGGTG AGCTCTGTGA AAGGACCCCC ACTCTCTATC CGAGGCGGTG 
    GTATGACATT CCCCAAGAAA ATCTAAGATA CTCCACTTTT AGGCTCCATC 
    TTTTGTAGTT ATATAAAAAA AAAAGTCACT GTTGTTGGTA TAAGAATGTA 
    TAATTTTAAC GTGAAAGCCA CACAATACTG ATGTTTGGAA CTCATTCCAG 
    TAATTATTAA TTTTTATTTA TTCAGCAAAC TTTGTGTAAC GATGTAATTT 
    GTTGTTGATG ATGAATGAAT ATGAATGTAG GCCTTCTTCT TCTGTCAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G51370.2 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein phosphatase 2C-related 4.7e-46
    HMMPanther PROTEIN PHOSPHATASE-2C 3.4e-29
    HMMPanther Protein phosphatase 2C 3.4e-29
    HMMPanther PROTEIN PHOSPHATASE-2C 1.5e-129
    HMMPanther Protein phosphatase 2C 1.5e-129
    HMMSmart Protein phosphatase 2C-related 5.4e-46
    superfamily Protein phosphatase 2C-related 4.8e-47
    HMMPfam Protein phosphatase 2C, N-terminal 6.1e-36
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0

    See the detailed result >

    AT3G51370.2

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR