F29448

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29448

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29448

Determination of introduced cDNA(s)

  • RAFL09-11-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-M18 - Resource: pda01767

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-M18 - full reading 
    AACAGCAACG GGAATTTTCA TGGCGGCGAG GTCACCGGAC GTTATATAAT 
    TTGTATCCCA AATCAAAATT CTGAGAAGGA AGAGAAAGCA ATGGAGGACG 
    AATTGGAAGG TCTACGAGCT CATTTTCCTG TTTCGTTCGG TAAGACATCG 
    AAGGTTTCGG CGTCAACTGA AGCCATTCAC AGCGCAACTC GCCGCACCGA 
    TGTAGCCAAC GACGCCGGAG TTTCGTCGGA TATCACCACG AAGAAACCTG 
    ATTCCGATAA ATCTGGATTC CCGTCTCTAT CTTCCTCATC TCAAACCTGG 
    CTCCGAAGTG TTCGCGGTCC GAATCGTAAC CCTAACAGCT CCGGTGATGT 
    AGCAATGGGT CCGCCACCGC CACCGTCATC TAAACGGACG CAAGAGGAAG 
    AGGAGGAGGA TGAAGAAGTT ATGATGGGAC CACCGCCACC GCCTAAGGGA 
    CTCGGGAACA TTAATGATTC TGATGATGAG GGGGATATGA TCGGTCCTCC 
    GCCGCCGCCT CCTGCTGCTC GAGATTCAGA TGAAGATTCA GATGACGATG 
    ATGATAATGA CAACGAGGAG AATCGTTACC AGATTCCATT GAGCAACGAG 
    ATTCAGCTTA AGGGACATAC AAAGATTGTT TCATCTCTCG CTGTTGATAG 
    TGCTGGAGCT AGAGTTCTTT CAGGAAGCTA TGACTACACT GTGAGAATGT 
    ACGATTTCCA AGGGATGAAT TCGAGACTAC AGTCTTTTAG ACAGATAGAG 
    CCATCTGAGG GACACCAAGT TCGCAGCGTG AGCTGGAGTC CCACTTCTGG 
    TCAATTTCTA TGCGTTACTG GCTCTGCACA AGCTAAGATT TTTGATCGAG 
    ATGGTCTTAC TCTTGGTGAG TTTATGAAAG GAGATATGTA TATTCGTGAT 
    CTGAAGAACA CTAAGGGACA TATTTGTGGG TTGACCTGTG GAGAATGGCA 
    TCCGAGGACT AAGGAAACCG TTCTGACTTC GTCGGAAGAC GGGTCTTTGC 
    GTATATGGGA TGTTAATAAC TTCCTAAGCC AAACGCAGGT TATTAAGCCT 
    AAGCTTGCTA GACCAGGGAG GGTTCCAGTT ACAACCTGTG CTTGGGACCG 
    TGACGGAAAG CGTATCGCCG GTGGTGTAGG AGATGGATCT ATACAGATTT 
    GGAGTCTCAA GCCGGGATGG GGAAGCCGAC CAGATATATA CGTTGGGAAG 
    GCCCACACTG ATGATATAAC CTCTGTAAAG TTCTCTAGCG ATGGCAGAAT 
    TCTGTTGTCA AGGAGTTTTG ATGGTTCTCT GAAGGTCTGG GACTTGCGGC 
    AGATGAAAGA AGCTCTAAAA GTTTTCGAGG GTCTACCTAA TTATTATCCT 
    CAAACCAACG TTGCCTTTAG TCCAGACGAA CAAATCATCC TGACTGGAAC 
    ATCCGTCGAG AAAGACAGCA CAACAGGAGG CTTGCTATGT TTCTACGATC 
    GCACCAAACT AGAGATAGTT CAAAAAGTCG GAATCTCTCC AACTTCCAGC 
    GTGGTGCAAT GCGCTTGGCA CCCGAGGTTG AATCAGATAT TTGCAACATC 
    CGGAGACAAA AGCCAAGGAG GGACTCACAT TCTTTACGAC CCAAGTCAGA 
    GCGAGAGAGG CGCATGCGTC TGTGTTGCAC GTGCACCAAG GAAGAAATCT 
    GTAGATGATT ACCAACCAGA ACCAGTAATA CACAATCCTC ATGCATTACC 
    ATTGTTCAGA GACGCACCAA GCCGTAAACG AGAAAGAGAG AAAGCATTGA 
    AGGATCCAAT GAAATCCCAC AAGCCTGAGA TACCCATGAC AGGTCCTGGT 
    CATGGTGGAA GAGTTGGGAC TACTGGTAGT GGCTTATTAA CACAATATCT 
    TCTCAAGCAA GGTGGGATGA TAAAAGAGAC GTGGATGGAA GAAGATCCAA 
    GAGAAGCAAT ATTGAAATAC GCAGAGGTTG CTGTTAAAGA TCCAAAGTTT 
    ATTGCACCTG CTTACTCTCA GACCCAGCCT AAGACCATCT TCGCTAAATC 
    TGATGACGAA GAAGAAGAAG GTGACACTAA AAAATAATTA GAGTTTTTCA 
    AATTCAACGA CCGTTTCCTT GTATTCTGTA TAATGTTATC ATATCGTGGC 
    ACTTTAGAAT ATACTGAAAG AACACATTCA TCCCCGAATT GCATTTTTGC

    Gene models with high sequence identity

    1. AT2G20330.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam WD40 repeat, subgroup 0.000022
    HMMPfam WD40 repeat, subgroup 0.46
    HMMPfam WD40 repeat, subgroup 0.00032
    HMMPfam WD40 repeat, subgroup 0.0011
    HMMPfam WD40 repeat, subgroup 0.000000024
    HMMPfam WD40 repeat, subgroup 1.9
    Coil coiled-coil 0
    HMMPanther GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2.9e-140
    PatternScan WD40 repeat, conserved site 0
    FPrintScan G-protein beta WD-40 repeat, region 0.000021
    FPrintScan G-protein beta WD-40 repeat, region 0.000021
    FPrintScan G-protein beta WD-40 repeat, region 0.000021
    Gene3D WD40/YVTN repeat-like-containing domain 3.6e-52
    ProfileScan WD40 repeat 2 11.444
    ProfileScan WD40 repeat 2 10.943
    ProfileScan WD40 repeat 2 8.904
    ProfileScan WD40 repeat 2 15.421
    ProfileScan WD40-repeat-containing domain 28.159
    superfamily WD40 repeat-like-containing domain 9.8e-61
    HMMSmart WD40 repeat 0.000061
    HMMSmart WD40 repeat 2.8
    HMMSmart WD40 repeat 0.0065
    HMMSmart WD40 repeat 0.35
    HMMSmart WD40 repeat 0.0000003
    HMMSmart WD40 repeat 76

    See the detailed result >

    AT2G20330.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 32306 Blast hits to 19564 proteins in 654 species: Archae - 48; Bacteria - 6195; Metazoa - 11628; Fungi - 6530; Plants - 3814; Viruses - 23; Other Eukaryotes - 4068 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR