F29512

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29512

Determination of introduced cDNA(s)

RAFL06-86-B08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-B08 - Resource: pda03886

full reading [+] show sequence

AGATCTCCTC CACATTACAT TCTCCAAGGA ATTTAACCTT TACCTACAAA 
TCTAAGCTTC TGTCGTTGAC TTCGAAAACT GATATCTATA AGTCAAAATC 
CCCATTCTCA ATCGCTCATC GTCTTGTAGA ACTAATTGAC TAAACAATGG 
CGGACAACAC AGGATCCGAG ATGAAATCAG GTTCGTTTAT GTTAGAGAAA 
TCCGCCAAGA TCTTTGTCGC TGGACATAGG GGATTGGTTG GATCTGCCAT 
TGTCCGCAAG CTCCAGGATC AGGGTTTCAC CAATTTGGTC CTTCGAACCC 
ATTCAGAGCT TGATCTCACT AGCCAATCAG ATGTTGAATC TTTCTTTGCT 
ACAGAGAAAC CAGTTTATGT CATCCTAGCT GCTGCTAAAG TCGGTGGGAT 
TCATGCTAAC AACACATACC CAGCTGATTT CATTGGGGTC AATCTCCAAA 
TCCAGACCAA TGTGATCCAC TCTGCTTATA CACACGGTGT GAAGAAACTC 
CTCTTCCTTG GTTCATCTTG CATTTACCCC AAATTTGCTC CTCAGCCGAT 
TCCCGAATCT GCGCTTCTTA CCGGTCCGCT CGAACCGACA AACGAATGGT 
ATGCGATCGC CAAGATCGCG GGTATTAAGA TGTGTCAAGC TTACCGGCTT 
CAGCATCAGT GGGATGCTAT CTCCGGTATG CCCACGAATC TGTATGGTCA 
GAATGATAAT TTCCACCCGG AGAATTCCCA TGTGCTGCCT GCTCTCATGA 
GGAGGTTTCA TGAAGCCAAA GCCAATAATG CTGACGAAGT TGTGGTTTGG 
GGAAGTGGAA GCCCGTTGAG GGAGTTTTTA CATGTCGATG ATTTGGCTGA 
TGCTTGTGTT TTCTTGATGG ATCAGTACAG CGGATTTGAG CATGTGAATG 
TAGGAAGTGG TGTTGAAGTG ACGATCAAAG AATTGGCTGA GTTGGTGAAA 
GAAGTTGTTG GGTTTAAAGG AAAGCTTGTT TGGGATACCA CAAAACCAGA 
CGGGACACCA AGGAAACTGA TGGATAGCTC GAAGCTTGCG TCTTTGGGAT 
GGACACCGAA GATTTCGCTT AAAGATGGCC TCTCCCAAAC TTATGAATGG 
TATTTGGAAA ATGTTGTGCA GAAGAAGCAG TAAAAAAAAC AAGGTCCAAA 
ACACAAAGCA ATATTCATTC TCTTTACACG TGAATGTTTA TGCGTTTGAT 
TTTTGGTTCT ATACAGATCT CTCTATCTCT TTTATGTAAT TTTTGTATTC 
ATGGATTTCA TACAGTTCAA GTTAAGCAAA CTTACTTTGT AATAAATGTA 
CCATTGTTGT TGAGATTATC AATAAAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT1G17890.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.9e-92
Gene3D	NAD(P)-binding domain	9.6e-75
HMMPfam	NAD-dependent epimerase/dehydratase	7.9e-73
HMMPanther	GDP-FUCOSE SYNTHETASE	1.2e-203
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	1.2e-203

See the detailed result >

AT1G17890.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647; Bacteria - 15991; Metazoa - 493; Fungi - 205; Plants - 723; Viruses - 26; Other Eukaryotes - 8780 (source: NCBI BLink).
Link: InterPro Scan - TAIR