F29516

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29516

Determination of introduced cDNA(s)

RAFL04-17-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-C19 - Resource: pda02343

full reading [+] show sequence

AGAAGAAAAA CACAATCGTT TAATCTCACC CAAGAAGACA AAAACACAGA 
GAGAGAAAGA GAGAGAAATG GCGACGACAA CAACAGAAGC AACGAAGACA 
TCATCGACCA ATGGAGAAGA TCAGAAGCAG TCTCAGAATC TTCGACATCA 
AGAAGTTGGT CACAAGAGTC TCTTACAGAG CGATGATCTC TACCAGTATA 
TACTGGAGAC AAGTGTGTAT CCTAGAGAAC CAGAATCAAT GAAGGAACTC 
AGGGAAGTGA CAGCAAAACA TCCATGGAAC ATAATGACCA CATCAGCTGA 
TGAAGGACAG TTCTTAAACA TGCTTATCAA GCTCGTTAAC GCCAAGAACA 
CAATGGAGAT CGGAGTTTAC ACTGGCTACT CTCTTCTCGC CACCGCTCTT 
GCTCTCCCTG AAGACGGCAA AATTCTGGCT ATGGATGTCA ACAGAGAGAA 
TTACGAATTG GGTTTACCGA TCATTGAGAA AGCCGGCGTT GCTCACAAGA 
TCGACTTCAG GGAAGGCCCT GCTCTTCCCG TTCTTGATGA AATCGTTGCT 
GACGAGAAGA ACCATGGAAC ATATGACTTT ATATTCGTTG ATGCTGACAA 
AGACAACTAC ATCAACTACC ACAAGCGTTT GATCGATCTT GTGAAAATTG 
GAGGAGTGAT TGGCTACGAC AACACTCTGT GGAATGGTTC TGTCGTGGCT 
CCTCCTGATG CACCAATGAG GAAGTACGTT CGTTACTACA GAGACTTTGT 
TCTTGAGCTT AACAAGGCTC TTGCTGCTGA CCCTCGGATC GAGATCTGTA 
TGCTCCCTGT TGGTGATGGA ATCACTATCT GCCGTCGGAT CAGTTGATTT 
GACTCCTCCC TACTCTGAGT TTGTCCACAG TGGATTACTT TCCATCTTCT 
TATACCTTTC AATCGCATTT TCACCAACCA CTAAAATGGA CCTTTTTATG 
TATTTGTGTT AAGTAATATC TCCATTGTCC TTGTTTTGCT TTCTTCTGA

Gene models with high sequence identity

AT4G34050.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	O-methyltransferase, family 3	2.8e-89
superfamily	S-adenosyl-L-methionine-dependent methyltrans	1.2e-40
HMMPanther	O-methyltransferase, family 3	3e-90
Gene3D	no description	2.5e-54

See the detailed result >

AT4G34050.1

Model type: Protein coding
Short Description: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description: caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).
Link: InterPro Scan - TAIR