F29517

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29517

Determination of introduced cDNA(s)

  • RAFL06-07-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-J21 - Resource: pda02842

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-J21 - full reading
    AAAAAAAAGC TGACTCTACG CTCTCTCAAA AGTCGAATAT CCCAAATTCG 
    ATCCGTTTTC CGGCGATAAT CTCCGATCTA GATCCGATGG CGAAAGAACC
    AGTTCGTGTG CTCGTTACTG GAGCTGCAGG ACAAATCGGA TATGCTCTTG
    TACCTATGAT TGCAAGGGGT ATCATGCTTG GTGCTGACCA ACCTGTTATC
    CTCCACATGT TGGATATTCC TCCAGCTGCT GAAGCTTTGA ACGGTGTTAA
    GATGGAGTTG ATCGATGCTG CTTTCCCTCT TCTTAAAGGT GTTGTTGCTA
    CAACTGATGC CGTTGAGGGA TGTACTGGAG TCAATGTTGC TGTTATGGTT
    GGTGGTTTCC CGAGGAAAGA AGGTATGGAG AGGAAGGATG TGATGTCCAA
    GAATGTTTCC ATCTACAAGT CTCAGGCTGC TGCCTTGGAG AAGCATGCCG
    CTCCTAACTG CAAGGTTCTT GTTGTGGCCA ACCCGGCAAA CACCAACGCA
    TTGATCCTCA AGGAATTTGC ACCATCAATC CCTGAAAAGA ACATCTCTTG
    TTTGACAAGG CTTGACCACA ACAGGGCTTT GGGACAGATC TCTGAGAGGT
    TGAGCGTGCC AGTGTCTGAT GTTAAGAACG TGATCATCTG GGGAAACCAC
    TCATCCTCAC AGTACCCAGA TGTCAACCAT GCTAAAGTGC AGACCTCGTC
    TGGAGAGAAG CCTGTCCGTG AGCTCGTCAA GGACGATGCA TGGTTGGACG
    GAGAATTTAT CTCTACAGTT CAACAACGTG GAGCTGCAAT CATCAAGGCG
    AGGAAGTTGT CTAGTGCGCT CTCTGCTGCT AGCTCTGCTT GTGACCACAT
    CCGTGACTGG GTCCTTGGAA CTCCAGAGGG TACGTTCGTT TCCATGGGAG
    TATACTCCGA TGGCTCTTAC AGCGTTCCAT CAGGACTTAT CTACTCCTTC
    CCTGTAACTT GTCGCAATGG AGACTGGAGT ATTGTCCAAG GCCTTCCGAT
    TGATGAAGTA TCAAGGAAGA AGATGGATTT GACTGCAGAG GAGCTCAAGG
    AAGAGAAGGA CTTGGCGTAC TCATGCCTCT CTTAAACCCT TCTGGAGCAA
    AATTTTCATC TATAAGGTGT GAGATCAGTT AAAGCCTTTC AGGGCTTTGT
    CCGAATAAGA AGTGTGTTTG AAAGATCTCC AAACACTGTT TTATAACCTC
    TTTGGTCTCT TTGATGAGTA TTGTCCCTGG TCTGTTTCTA AACCAGGATA
    TCGTTTTTTT CAATGTGTCT GATTTGGTTT ACCCATGAAA AGAAGAAAAT
    TGGCAGTTGC ATGG

    Gene models with high sequence identity

    1. AT1G04410.1 [+] show detail - Lactate/malate dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 2.1e-60
    superfamily NAD(P)-binding domain 3.2e-43
    Gene3D NAD(P)-binding domain 2.7e-51
    Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 4e-70
    HMMPanther Malate dehydrogenase, NAD/NADP 6.1e-130
    HMMPIR L-lactate/malate dehydrogenase 6.4e-58
    HMMPfam Lactate/malate dehydrogenase, C-terminal 8.7e-42
    HMMPfam Lactate/malate dehydrogenase, N-terminal 3.2e-33
    PatternScan Malate dehydrogenase, active site 0
    HMMTigr Malate dehydrogenase, NAD/NADP 2.4e-241
    HMMTigr Malate dehydrogenase, NAD-dependent, cytosolic 1.5e-276

    See the detailed result >

    AT1G04410.1

    Model type
    Protein coding
    Short Description
    Lactate/malate dehydrogenase family protein
    Computational Description
    Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR