F29614

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29614

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29614

Determination of introduced cDNA(s)

  • RAFL09-66-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-C10 - Resource: pda08635

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-C10 - full reading 
    ATATCATTTT TCACAGAATC ATAGAAAAAT CAAGAAAATG TCTGAATCAA 
    GGAGCTTAGC CTCACCACCA ATGTTGATGA TTCTTCTCAG CCTTGTAATA 
    GCTTCCTTCT TCAACCACAC AGCTGGACAA ATCGGAGTAT GCTACGGGAT 
    GCTAGGCGAT ACCTTGCCAA GTCCATCGGA CGTTGTGGCT CTTTACAAAC 
    AACAAAACAT CCAGCGAATG CGGCTCTACG GCCCTGACCC AGGCGCTCTT 
    GCCGCTCTCC GTGGCTCTGA CATCGAGCTC ATCCTCGACG TTCCCAGTTC 
    AGATCTTGAA CGTCTCGCCT CCAGTCAAAC GGAGGCCGAC AAGTGGGTTC 
    AAGAAAACGT TCAGAGCTAC AGAGATGGTG TCAGATTCCG GTACATCAAC 
    GTTGGAAATG AGGTGAAACC CTCAGTTGGG GGGTTTCTCT TACAAGCAAT 
    GCAGAACATC GAGAACGCGG TTTCTGGAGC AGGGCTTGAA GTCAAGGTCT 
    CAACAGCTAT AGCCACTGAC ACCACCACTG ATACGTCTCC TCCGTCTCAA 
    GGAAGGTTCA GGGATGAGTA TAAGAGCTTT CTCGAACCAG TGATAGGTTT 
    CTTGGCAAGC AAGCAATCTC CCTTGCTCGT GAATCTCTAC CCTTACTTCA 
    GCTACATGGG AGACACGGCC AACATCCATC TAGACTACGC TCTGTTCACC 
    GCCCAGTCCA CTGTTGATAA CGATCCAGGG TACTCATACC AAAACCTATT 
    CGACGCAAAT CTCGACTCGG TTTATGCAGC ATTGGAGAAA TCAGGGGGCG 
    GATCGTTGGA AATCGTGGTG TCGGAGACCG GTTGGCCCAC AGAGGGAGCA 
    GTCGGGACGA GTGTGGAAAA CGCAAAGACT TATGTTAACA ATTTGATACA 
    ACATGTGAAG AATGGATCAC CGAGAAGGCC AGGGAAAGCT ATAGAGACTT 
    ATATATTCGC TATGTTCGAT GAGAATAAGA AGGAACCAAC GTATGAGAAG 
    TTTTGGGGAC TGTTTCATCC AGATCGACAG TCTAAGTATG AAGTTAATTT 
    CAACTAATCC TTAGAGACTT GTGGGCTTTT TATGTAAGCG TATTTAAAAA 
    TTGGGAACTT GTTGTAGTAA TAAGGAATAA TTAATGCGCT TTCAGCGTGT 
    AGTATGTTGT TATTTTTAAG GTTATAAATG AGCTGCAAGC ATAAATAAG

    Gene models with high sequence identity

    1. AT3G57260.1 [+] show detail - beta-1,3-glucanase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 17 1.8e-130
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.1e-121
    PatternScan Glycoside hydrolase, family 17 0
    superfamily Glycoside hydrolase, catalytic core 5.7e-113

    See the detailed result >

    AT3G57260.1

    Model type
    Protein coding
    Short Description
    beta-1,3-glucanase 2
    Curator Summary
    beta 1,3-glucanase
    Computational Description
    "beta-1,3-glucanase 2" (BGL2); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, protein binding, cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: systemic acquired resistance, response to cold; LOCATED IN: apoplast, cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 3 (TAIR:AT3G57240.1); Has 2232 Blast hits to 2218 proteins in 176 species: Archae - 0; Bacteria - 18; Metazoa - 3; Fungi - 79; Plants - 2105; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR