F29631

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29631

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29631

Determination of introduced cDNA(s)

  • RAFL09-33-I23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-I23 - Resource: pda08221

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-I23 - full reading 
    ACCCTATATA AACATATCCA AAAACCGCAA GAAAGCTCAC AAGAAATCTC 
    CTCCCATGGC AGATTCAAGT TCTTCTCTCC CTCCTCTTTG CGAGAAGATC 
    TCATACAAAA ACTATTTTCT AAGAGTTGTG GATCTCACGA TTCTAGGCTT 
    TCTCTTTTCT CTTCTCTTGT ACCGAATTCT ACTTATGAAC CAAAACAACT 
    CCGTTTGGGT TGTGGCTTTC CTCTGTGAAT CCTTTTTCTC TTTCATATGG 
    CTTCTTATTA CCAGCATAAA ATGGAGTCCT GCTTCATATA AATCATATCC 
    TGAAAGACTT GATGAAAGGG TTCATGACCT TCCATCGGTA GATATGTTTG 
    TGACTACTGC GGATCCTGTT CGGGAGCCGC CGATTCTTGT AGCAAACACG 
    TTGCTTTCGC TGTTAGCAGT GAATTATCCA GCGAATAAAC TTGCTTGTTA 
    TGTATCGGAT GATGGATGCT CACCTCTCAC TTACTTCTCT CTCAAGGAAG 
    CTTCTAAGTT CGCCAAGATT TGGGTTCCCT TCTGCAAAAA ATATAACATT 
    AAAGTTAGAG CTCCTTTTAG ATATTTTTTG AACCCTCCAG CCGCAACAGA 
    AAGTTCTGAA TTCAGTAAAG ACTGGGAAAT AACCAAGAGG GAGTACGAGA 
    AATTAAGCAG GAGGGTGGAA GATGCCACTG GAGATTCCCA TTGGTTGGAT 
    GCAGAAGATG ACTTTGAAGA TTTCTCGAAT ACAAAACCAA ATGATCATTC 
    AACTATAGTA AAGGTGGTAT GGGAGAACAA GGGAGGTGTC GGAGTCGAGA 
    ACGAGGTTCC TCATTTTGTA TACATTTCAA GAGAGAAAAG ACCAAATTAT 
    CTTCATCATT ACAAAGCTGG AGCCATGAAC TTTCTGGTAA GAGTGTCAGG 
    GTTGATGACA AATGCACCAT ACATGTTGAA CGTAGACTGT GACATGTATG 
    CTAATGAAGC AGATGTGGTG CGCCAAGCAA TGTGTATATT TCTACAAAAA 
    TCAATGAATT CAAACCATTG TGCTTTTGTT CAATTCCCTC AAGAGTTCTA 
    TGATTCTAAC GCCGACGAAC TCACCGTCTT ACAATCATAT TTGGGACGAG 
    GAATTGCGGG AATCCAAGGA CCTACATATG CAGGTTCAGG ATGCTTCCAC 
    ACTAGAAGAG TTATGTACGG TCTATCAATA GATGATTTAG AAGATGATGG 
    AAGTCTTTCT TCACTTGCAA CAAGGAAGTA TTTGGCTGAA GAGAATTTAG 
    CTAGAGAATT TGGGAACTCT AACGAGATGG TGACATCGGT GGTCGAGGCA 
    TTACAAAGAA AACCAAATCC GCAAAATACC CTTGCAAACT CCCTCGAAGC 
    GGCTCAAGAA GTGGGACATT GTCATTTTGA GTACCAAACT AGCTGGGGCA 
    AAACTATTGG TTGGTTATAC GAATCAACAG CGGAAGATGC AAACACGAGT 
    ATCGGAATCC ATTCGAGAGG GTGGACTAGC TCATATATAT CTCCGAAACC 
    ACCAGCGTTT CTTGGGGCTA TGCCACCGGG AGGTCCGGAA GCGATGCTCC 
    AGCAGCGGCG ATGGGCCACA GGACTGCTCG AAGTCCTTTT CAACAAACAA 
    AGTCCGTTGA TCGGAATGTT TTGTAGGAAA ATAAGATTTC GACAAAGCTT 
    GGCTTATTTA TACATTTTCA CTTGGGGTCT AAGGTCAATC CCTGAGCTTA 
    TTTATTGTCT CTTGCCTGCT TATTGCCTAC TCCACAACGC TGCCTTATTT 
    CCCAAGGGAG TTTATTTAGG TATAGTCGTC ACACTTGTGG GAATGCATTG 
    TCTTTACTCT CTATGGGAAT TTATGAGCCT TGGTTTCTCA GTACAATCGT 
    GGTTTGCCTC CCAATCATTT TGGAGGATAA AAACCACTTG CAGTTGGTTA 
    TTTAGCATCC CTGATATCAT ACTCAAGCTA CTTGGAATCT CGAAAACTGT 
    TTTCATAGTC ACTAAAAAGA CTATGCCCAA GACAATGTCA GGATCTGGAT 
    CCGAAAAATC TCAACGAGAA GTTGATTGTC CAAACCAAGA TTCCGGTAAA 
    TTTGAATTTG ATGGCTCGCT TTATTTCTTG CCTGGCACAT TTATCCTTTT 
    AGTGAATCTA GCCGCTCTAG CCGGTTGTTC GGTGGGTCTA CAACGTCACA 
    GAGGAGGTGG TTCGGGTTTA GCAGAAGCTT GTGGATGTAT TTTGGTGGTT 
    ATATTGTTTC TTCCATTTCT AAAGGGTATG TTTGAGAAGG GAAAATATGG 
    TATCCCATGG TCTACTCTTT CTAAAGCTGC CTTTTTAGCA GTTTTATTTG 
    TTGTTTTCTC TGTGGGAAAC TAGTATACTG ATATGGCTTT AATTTGTAGC 
    TAAAAACTGC TAATATGAAA ATAATTATTC TCTAGT

    Gene models with high sequence identity

    1. AT2G32530.1 [+] show detail - cellulose synthase-like B3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cellulose synthase 7.8e-82
    HMMPfam Cellulose synthase 3.8e-46

    See the detailed result >

    AT2G32530.1

    Model type
    Protein coding
    Short Description
    cellulose synthase-like B3
    Curator Summary
    encodes a gene similar to cellulose synthase
    Computational Description
    cellulose synthase-like B3 (CSLB03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like B4 (TAIR:AT2G32540.1); Has 2368 Blast hits to 2281 proteins in 468 species: Archae - 7; Bacteria - 755; Metazoa - 0; Fungi - 3; Plants - 1582; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR