F29729

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29729

Determination of introduced cDNA(s)

  • RAFL09-68-I02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-I02 - Resource: pda08685

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-I02 - full reading 
    ACACGCCATG AGAACTCTTC TTCAATGGCA CTTACCATCT CAATCTCTTG 
    TTTCTCCTCT TACTTTGTGT CTCTCCTTCT TCTTGTTCTA TCTTCCTTCT 
    CCTTTGTTTG CTTCTCCCTC TCCACCGTCT CCATCTCCCA CATCTCTAAT 
    CAGACTCTTG TATGTGCTCT CAACAACCAC TCTTATCTTC AATGTTCCAG 
    TTTCCCTTTA AATTCGATTC CATTTTCTTT AACCGGTAAC CTTCGAAATC 
    GAAGGTTTTC GGGGGTTGTT TCAGGGAATG GGTTTGTGTG CGGATTGATA 
    TCGCGGCTGG ATTCCAACAC TTCCACACTT CTTTGTTGGA GATTCTCTGT 
    TGATGGAACT AATATGTTGC ACAAAAGAAT CTACCACGGT CCTGAGCTCG 
    AAGAGCTAGA AGCCGGGAAT TTCCGCATTT GTGGAGTTGA AAGAGTCTCA 
    AGGCGCCTCC GTTGCTGGCA ACCGTACTAT CTGCCACGGC CGGATAATTA 
    CCGTTCCATT GCCTTGGGAG ATAATTTTTT CTGTGGGCTA TCTCAGCCAC 
    CTGGTATGAT CAGTTGTGAA GGTATAGCCA AAGTGCCGAG TGGAGACCAC 
    TACATCGCGA TAGCGGCTGG ATCACGACAA GCGTGTGCGA TCACTGTTGA 
    CAATGATGTC GAGTGTTGGG GACAAACACA GTCGCTGCCA CGTGAAAAGT 
    TCTTAGCACT AGCGGTTGGG GAAGACCGTG GTTGCGGTGT TAGATGGTCT 
    AATGGAACTG TGGTGTGTTG GGGCAACAAC AACAACTTTA GTTTGCCTCA 
    AACGCTTAAG GACATTCATT TTACATCAAT ATATGCTAAA GGGCCAATGT 
    TTTGCGGTGT TGCCACAAGA AATTACACTC TAATTTGTTG GGGGAATGAG 
    AATTTTAAAT CCGGTGTTTT CACTCCATTC CAAGGCCTAA TTTCTCAAGT 
    GGTAATGCCA GGACCGTGTA GAAGAGAATG CCCTTACCGT CCATTGTCAG 
    GATGACAGTC CTTATGCGGC AATGAGTTGA TGATTTGCGA TTTGAAAAGA 
    AATGATGGAG AGTTTCCTGA TACTAGGGCT CAAAACTCTA AGAACAAAAC 
    TTGGAGCAGA AGAAACATTG CGTTTCTAGT GGTCGGATGC GTTGGAACGT 
    TTTCCTTGCT CCTTGTCATC AGTTTCTTGA TCTTTAAAAG CCACTGTCGA 
    TGCCGTGTCC ATGACTCTGG ACGTCTTGAT GATACTAGGA CAATAGACAT 
    ACCCAAGCTC GAGAAGAGGC TGTGCACTCT AGCAAGTTTA GGTAATCCTG 
    GGCAGCTAAT GGAGTTCTCA ATTGACGAGC TAGCTCTAGC CACGGATGGT 
    TTCTCTGTCC GGTTTCATCT TGGTATAGGC AGCTTCGGCT CTGTTTATCA 
    AGGTGTTTTG TCGGATGGAC GTCATGTCGC AATCAAACGA GCTGAGCTAA 
    CAAATCCTAC ATTGTCTGGG ACAACGATGA GACACCGACG AGCAGATAAG 
    GATTCAGCGT TCGTGAACGA GCTAGAGTCT ATGTCGCGGC TTAACCACAA 
    AAATCTTGTT CGACTTCTGG GTTTCTATGA GGACACAGAA GAGAGGATTT 
    TGGTGTACGA GTACATGAAA AATGGATCTC TAGCCGATCA CCTTCACAAT 
    CCTCAATTTG ACCCTCTTTC GTGGCAAACA CGCTTGATGA TCGCGCTTGA 
    CGCTGCTCGT GGGATCCAAT ACCTTCATGA GTTTATCGTG CCTCCGGTGA 
    TCCACCGTGA CATAAAGTCA TCAAACATAC TTTTGGACGC CACATGGACA 
    GCCAAAGTTT CAGATTTCGG CCTATCTCAA ATGGGTCCAA CGGAAGAAGA 
    TGACGTCTCA CATCTCTCTT TACACGCTGC CGGTACATTG GGATATATCG 
    ACCCGGAGTA CTACAAGTTT CAACAGCTCA CAACCAAGAG CGATGTTTAC 
    AGCTTTGGCG TGGTGTTGCT GGAGTTGCTG TCTGGTCACA AAGCGATACA 
    CAATAACGAA GACGAAAACC CTAGAAACTT AGTGGAATAT GTTGTACCAT 
    ACATTTTGCT GGATGAGGCT CATAGAATAC TTGACCAGAG GATTCCACCG 
    CCGACCCCTT ACGAAATCGA GGCGGTGGCT CATGTCGGAT ACTTGGCAGC 
    GGAGTGTTTG ATGCCGTGTA GTCGGAAAAG GCCGTCAATG GTGGAGGTAG 
    TCAGTAAACT AGAGAGTGCT TTGGCCGCTT GTTTGACGGC TCCAAAGACG 
    GAGACCGTAT CTCGATCAAA CACTTATTAG CCACGTTTAG CTTAATTAAA 
    TCTTGTGGTC AACTGTAATT GTATTTATTT TTCTAGGGAT TAGGAATTTA 
    ATTAATTGGT ACAGAATTTT AATATTTTCT CC

    Gene models with high sequence identity

    1. AT5G47850.1 [+] show detail - CRINKLY4 related 4
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 1.8e-46
    HMMPanther PTO-LIKE KINASE 1.3e-166
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.3e-166
    ProfileScan Protein kinase, catalytic domain 38.28
    HMMSmart Serine/threonine-protein kinase domain 1.1e-29
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.3e-26
    superfamily Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 4.7e-14
    superfamily Protein kinase-like domain 7.2e-77
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 3e-10
    Gene3D no description 4.7e-18
    Gene3D no description 1e-51

    See the detailed result >

    AT5G47850.1

    Model type
    Protein coding
    Short Description
    CRINKLY4 related 4
    Computational Description
    CRINKLY4 related 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 3 (TAIR:AT3G55950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR