F29836

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29836

Determination of introduced cDNA(s)

  • RAFL09-36-A02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-36-A02 - Resource: pda06125

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-36-A02 - full reading 
    ACCAAATACA CATAATAAAG TTTCAATCTG TTTCTTCTTT TAGGGTTTGG 
    GAGATTTTTA ATCGGAGATC TCGAAAAGAT GATAGATTTC AGTCGAATCC 
    AGAAAGAGCT TCAGGACTGC GAGAGAAACC AGGATTCTTC GGGTATCCGG 
    GTCTGCCCCA AATCCGATAA CCTCACCCGA CTCACCGGAA CCATTCCTGG 
    TCCAATCGGT ACTCCTTACG AAGGCGGTAC ATTTCAGATC GATATCACTA 
    TGCCAGATGG GTATCCATTT GAGCCTCCAA AGATGCAGTT TTCAACTAAA 
    GTTTGGCATC CGAATATTAG TAGCCAAAGC GGTGCAATAT GCTTGGATAT 
    CTTGAAAGAC CAGTGGAGTC CAGCTCTTAC TCTGAAGACA GCTCTTGTTT 
    CAATTCAGGC TTTACTCTCT GCACCTGAGC CCAAAGACCC TCAAGATGCT 
    GTTGTAGCTG AACAGTACAT GAAGAACTAT CAAGTGTTTG TATCAACAGC 
    TCGTTACTGG ACTGAAACTT TCGCCAAGAA ATCTTCTCTA GAGGAAAAAG 
    TCAAGAGACT TGTGGAGATG GGTTTTGGAG ACGCTCAAGT TAGGAGTGCA 
    ATTGAATCAA GTGGTGGTGA TGAGAATCTG GCTCTGGAAA AGCTCTGTTC 
    TGCTTAGGAT CTATCAACTC AAGCCTCATT GGCGCTAGAT ATGTTATTTA 
    TTTGGTTTAT AACTCTTATG TGCTATGTTT CTGCTCTTGC CTACTGATAA 
    GAGTGAAACT ACTTTATAAA GATTATTAAA TGCAATGCTA TATCCAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G50870.1 [+] show detail - ubiquitin-conjugating enzyme 27
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1.4e-49
    HMMPfam Ubiquitin-conjugating enzyme, E2 4.7e-47
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 1e-08
    HMMSmart Ubiquitin-conjugating enzyme, E2 4.2e-65
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 4.9e-10
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 12.258
    ProfileScan Ubiquitin-conjugating enzyme, E2 39.015
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2-25KD 1.6e-92
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 1.6e-92
    superfamily Ubiquitin-conjugating enzyme/RWD-like 3e-53
    superfamily UBA-like 1.6e-06

    See the detailed result >

    AT5G50870.1

    Model type
    Protein coding
    Short Description
    ubiquitin-conjugating enzyme 27
    Computational Description
    ubiquitin-conjugating enzyme 27 (UBC27); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.4); Has 10156 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4517; Fungi - 2174; Plants - 1846; Viruses - 24; Other Eukaryotes - 1593 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR