F30203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30203

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30203

Determination of introduced cDNA(s)

  • RAFL04-09-J19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-J19 - Resource: pda00090

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-J19 - full reading 
    AGTGAGGTAA ACAAAACCAA AACCATCAGA TCTTAAGAAG AAGAACCTAA 
    AGCTCACTAC GATATTTTTC GAGAATATGA CGACTTTTTC TGTTCCGATT 
    GATAACGGAG ATTCTATGAA GATCGCAGAA GAAGAATCAC AAAGAACACT 
    GTACCCATAT GTTACTGGAA CTTCAATTGT TGCAATCAAG TACAAAGATG 
    GGGTTTTGAT GGCTTCTGAT ATGGGAGGTT CATATGGATC AACCTTAAGA 
    TACAAGAACA TCGAGAGAGT GAAGGCTATT GGTAAGCATT CTCTTCTTGG 
    TGCCAGCGGA GAAATCAGCG ACTTTCAGGA GATTCTCCGT TATCTTGATG 
    AGCTCACCCT GAATGATAAC ATGTGGGATG ATGGTAACTC TTTGGGACCA 
    AAAGAGATTC ACAACTATCT GACCCGTGTG ATGTACAACC GTCGCAACAA 
    GTTTAACCCT CTGTGGAACA CTCTCGTCCT TGGAGGCGTC AAAAATGGGA 
    AAAGTTACCT TGGAATGGTG TCAATGATTG GTGTTAGTTT TGAGGACGAT 
    CATGTTGCCA CTGGATTTGG AAACCACCTT GCTAGGCCAA TTCTTCGTGA 
    TGAGTGGCAT GCAGACCTGA GTTTTGAAGA TGGTGTCAAG CTACTTGAGA 
    AATGTATGCG TGTGCTTCTT TACCGTGACA GATCTGCTAT TAACAAGCTT 
    CAGATAGCGA AGATCACGGA AGAGGGCGTG ACGGTCTCAC AGCCATACTC 
    ATTGAAGACA TACTGGGAAT TCTCGTCATT CCACAACCCA ACTGCTGGTG 
    CTGCAGGCTC CTGGTAAGAA GCCAAGCAAC CACATCGGCT GGCGATCTTT 
    TAAGGAAGCT TTTATTTTAT TTTATGTGAT GTTGTTAAAC ACTTTGTACT 
    GTAGTTGTTT TACTATTAAA CTTGGTGGTT TCTTTCTGAC AGTCCAGAGT 
    TTAGATCAAT GAGGATTTAT AAAAAGTACT GGATATCTTT GGGTAGTAAT 
    CCATACCTTT GTTCATTG

    Gene models with high sequence identity

    1. AT1G56450.1 [+] show detail - 20S proteasome beta subunit G1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Proteasome, beta-type subunit, conserved site 0
    HMMPfam Proteasome, subunit alpha/beta 4e-34
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 7.4e-55
    Gene3D no description 5e-59
    HMMPIR Proteasome endopeptidase complex, beta subunit 2.3e-149
    HMMPanther PROTEASOME SUBUNIT BETA TYPE 4 5.5e-122
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 5.5e-122

    See the detailed result >

    AT1G56450.1

    Model type
    Protein coding
    Short Description
    20S proteasome beta subunit G1
    Curator Summary
    20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds
    Computational Description
    20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR