F30301

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30301

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30301

Determination of introduced cDNA(s)

  • RAFL09-34-D13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-D13 - Resource: pda06045

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-D13 - full reading 
    AATAAAAAAC GAAGAATCAA AACAAATCTT AGAGAAAACA AAAATCCAAT 
    TTTTGCTGTG AAGATGGCAA TGTCTGTAAA TGTTTCTTCT TCTTCGTCTT 
    CTGGGATCAT AAACTCTCGT TTCGGTGTTT CATTGGAGCC AAAAGTTTCG 
    CAAATTGGTT CGTTGAGGTT ATTGGATCGT GTTCATGTTG CTCCTGTGTC 
    TCTGAATCTA TCTGGGAAGC GATCATCATC TGTTAAACCT TTAAACGCTG 
    AACCAAAGAC AAAGGATTCA ATGATTCCTC TTGCGGCAAC AATGGTAGCA 
    GAAATTGCAG AGGAAGTTGA AGTGGTTGAG ATTGAGGATT TTGAAGAGCT 
    TGCTAAGAAG TTAGAGAATG CTTCACCTCT TGAGATTATG GACAAAGCTC 
    TTGAGAAATA CGGGAACGAT ATCGCCATTG CATTTAGTGG TGCAGAAGAT 
    GTTGCTCTTA TTGAGTACGC TCATTTGACT GGGAGGCCAT TTAGAGTATT 
    TAGTTTGGAT ACAGGGAGGT TGAATCCTGA GACGTATCGG TTTTTCGATG 
    CGGTGGAGAA GCACTATGGG ATTAGGATTG AGTATATGTT TCCTGATTCT 
    GTTGAGGTTC AAGGTTTGGT TAGGAGCAAG GGATTGTTCT CTTTTTATGA 
    GGATGGTCAT CAGGAGTGTT GCCGTGTTCG AAAGGTGAGA CCTTTGAGGC 
    GTGCTCTCAA GGGTTTAAAG GCTTGGATTA CTGGTCAGAG GAAAGATCAA 
    TCTCCGGGGA CAAGGTCTGA GATTCCGGTT GTTCAGGTTG ATCCGGTGTT 
    TGAAGGTTTG GATGGTGGAG TTGGTAGTTT GGTGAAGTGG AATCCGGTTG 
    CGAATGTTGA AGGGAATGAT GTTTGGAACT TCTTGAGGAC TATGGATGTT 
    CCGGTTAACA CATTGCATGC GGCAGGGTAT ATATCGATTG GATGTGAGCC 
    TTGCACGAAA GCGGTTTTAC CGGGTCAGCA CGAGAGAGAA GGGAGATGGT 
    GGTGGGAAGA TGCTAAAGCC AAGGAATGTG GACTTCACAA AGGGAATGTC 
    AAAGAAAACT CCGATGATGC TAAAGTGAAC GGGGAATCGA AATCCGCTGT 
    TGCAGATATC TTTAAGAGTG AGAATCTTGT GACTTTGAGC AGGCAGGGGA 
    TTGAGAATTT GATGAAGTTG GAGAACCGTA AAGAGCCTTG GATCGTCGTG 
    CTTTATGCTC CGTGGTGCCC CTTTTGTCAA GCCATGGAAG CATCGTATGA 
    TGAACTGGCG GATAAATTGG CTGGAAGTGG GATTAAGGTT GCCAAATTCA 
    GAGCAGATGG TGACCAGAAG GAGTTTGCTA AGCAGGAATT GCAGCTCGGT 
    AGCTTCCCTA CCATTCTGGT TTTCCCTAAG AACTCATCGA GACCGATCAA 
    GTATCCGTCT GAGAAGAGAG ATGTTGAGTC TTTGACTTCG TTCTTGAATC 
    TTGTCCGATA AGTAAACCAC AAAACCAGTC GACATTTCTA TGAGGAATAA 
    GAATTATATC TTCGTCTCGT TCCAGATTGC TAGAACAGAT GAAGTTGGTG 
    TTTGGAGAAT CAATTCAAAG CTTTGGATCA CAAAGTCAGA GATAAGCTCT 
    GCTACAAAGC TTGAGTAATT GCAGTATTGT AAGATTTATA AAGTTGCGAT 
    AGTGTTGATT CTTCATGTAA ATGTGTGGTG TCTATTAAAA TCAAGCCTCT 
    GTTTCTTCTC

    Gene models with high sequence identity

    1. AT4G04610.1 [+] show detail - APS reductase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Adenine nucleotide alpha hydrolases-like 1.7e-54
    superfamily Thioredoxin-like fold 9.3e-24
    ProfileScan Thioredoxin-like 11.675
    HMMPanther PROTEIN DISULFIDE ISOMERASE 8.2e-12
    HMMTigr Thioredoxin-independent 5'-adenylylsulphate reductase 0
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 6.4e-58
    Gene3D Thioredoxin fold 1.9e-17
    HMMPfam Phosphoadenosine phosphosulphate reductase 7.6e-43
    HMMPfam Thioredoxin domain 6.9e-13

    See the detailed result >

    AT4G04610.1

    Model type
    Protein coding
    Short Description
    APS reductase 1
    Curator Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.
    Computational Description
    APS reductase 1 (APR1); FUNCTIONS IN: adenylyl-sulfate reductase activity; INVOLVED IN: response to oxidative stress, sulfate reduction, sulfate assimilation; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5'-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 3 (TAIR:AT4G21990.1); Has 5999 Blast hits to 5419 proteins in 1658 species: Archae - 169; Bacteria - 2693; Metazoa - 1288; Fungi - 563; Plants - 600; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR