F30506

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30506

Determination of introduced cDNA(s)

  • RAFL09-85-L21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-85-L21 - Resource: pda17871

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-85-L21 - full reading 
    GACACCGATG GAGACTGTTG AGAAAGATTA GTTCTGTTCA TCTATTTTCA 
    GCTAAAGCTC TCGAAGATTT CAAACATGTT CGACAGGAAG AGGTTGGAAC 
    GCTAACGCGG GAGCTAGTGC GTGTGGCACG AAACCCGTGA ATTTAGGCCA 
    GTTGGTGAAC ATGTGTGTAG TCAACGCTCT AGGACGAGAG ATGATCGGAC 
    GGCGATTGTT CGGCGCCGAC GCCGATCATA AAGCTGACGA GTTTCGATCA 
    ATGGTGACGG AAATGATGGC TCTCGCCGGA GTATTCAACA TCGGAGACTT 
    CGTGCCGTCA CTTGATTGGT TAGATTTACA AGGCGTCGCT GGTAAAATGA 
    AACGGCTTCA CAAGAGATTC GACGCTTTTC TATCGTCGAT TTTGAAAGAG 
    CACGAAATGA ACGGTCAAGA TCAAAAGCAT ACAGATATGC TTAGCACTTT 
    AATCTCCCTT AAAGGAACTG ATCTTGACGG TGACGGAGGA AGCTTAACGG 
    ATACTGAGAT TAAAGCCTTG CTATTGAACA TGTTCACAGC TGGAACTGAC 
    ACGTCAGCAA GTACGGTGGA CTGGGCTATA GCTGAACTTA TCCGTCACCC 
    GGATATAATG GTTAAAGCCC AAGAAGAACT TGATATTGTT GTGGGCCGTG 
    ACAGGCCTGT TAATGAATCA GACATCGCTC AGCTTCCTTA CCTTCAGGCG 
    GTTATCAAAG AGAATTTCAG GCTTCATCCA CCAACACCAC TCTCGTTACC 
    ACACATCGCG TCAGAGAGCT GTGAGATCAA CGGCTACCAT ATCCCGAAAG 
    GATCGACTCT ATTGACGAAC ATATGGGCCA TAGCCCGTGA CCCGGATCAA 
    TGGTCCGACC CGTTAGCATT TAAACCCGAG AGATTCTTAC CCGGTGGTGA 
    AAAATCCGGC GTTGATGTGA AAGGAAGCGA TTTCGAGCTA ATACCGTTCG 
    GAGCTGGGAG GAGAATCTGT GCCGGTTTAA GTTTAGGGTT ACGTACGATT 
    CAGTTTCTTA CGGCGACGTT GGTTCAAGGA TTTGATTGGG AATTAGCTGG 
    AGGAGTTACG CCGGAGAAGC TGAATATGGA GGAGAGTTAT GGGCTTACAC 
    TGCAAAGAGC GGTTCCTTTG GTGGTACATC CTAAGCCAAG GTTGGCTCCG 
    AACGTTTATG GACTCGGGTC GGGTTAAAAT TTAACTTTGC TTCTTGGACA 
    AGGTATATGG CTTGCACGAA AATAAAGTTT TAAAACAGCG TAGTTTGATC 
    CGGAGTTAGC TTTATGTAAG AACGTGTAAC GCCAAATCAA GTCATTATTA 
    AATATTGTGA GTTGTTTGTA ACCTATATAT AAATCTTGAA GAGGAAGATT 
    TCAAAAAAAA AA

    Gene models with high sequence identity

    1. AT5G07990.1 [+] show detail - Cytochrome P450 superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 1.2e-81
    HMMPanther FLAVONOID 3-HYDROXYLASE 7e-174
    HMMPanther Cytochrome P450 7e-174
    Gene3D Cytochrome P450 1e-93
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, E-class, group I 9.8e-39
    FPrintScan Cytochrome P450, C-terminal 4.4e-12
    FPrintScan Cytochrome P450, C-terminal 4.4e-12
    FPrintScan Cytochrome P450, C-terminal 4.4e-12
    FPrintScan Cytochrome P450, C-terminal 4.4e-12
    superfamily Cytochrome P450 8.6e-99

    See the detailed result >

    AT5G07990.1

    Model type
    Protein coding
    Short Description
    Cytochrome P450 superfamily protein
    Curator Summary
    Required for flavonoid 3' hydroxylase activity.
    Computational Description
    TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR