F30511

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30511

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30511

Determination of introduced cDNA(s)

  • RAFL05-04-H06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-H06 - Resource: pda02441

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-H06 - full reading 
    GCCGTCTCTT AGAATCACAT CCACGTCGTC GTCTCCATAC CCATGGCTAC 
    TCTTTTAGCC ACTCCTATCT TCTCTCCTTT AGCTTCTTCT CCAGCAAGGA 
    ACCGTCTTTC TTGCTCTAAG ATCCGTTTCG GTTCCAAAAA TGGGAAAATT 
    CTCAATTCTG ATGGTGCCCA GAAGTTGAAT CTCTCAAAAT TCCGTAAACC 
    CGATGGCCAA AGATTTCTAC AAATGGGTTC TTCTAAAGAG ATGAACTTTG 
    AGAGAAAACT CTCAGTCCAA GCTATGGATG GTGCAGGAAC AGGAAACACA 
    TCAACGATCT CTCGTAACGT AATTGCGATA AGTCACTTGT TGGTATCACT 
    TGGGATCATT CTTGCTGCAG ACTATTTCTT GAAGCAGGCG TTTGTAGCAG 
    CGTCTATTAA GTTCCCAAGT GCTTTGTTTG GGATGTTCTG TATTTTCTCT 
    GTTCTTATGA TATTTGATTC GGTTGTTCCT GCTGCTGCAA ATGGTTTGAT 
    GAATTTCTTC GAGCCTGCGT TTCTGTTTAT CCAAAGATGG CTTCCTTTGT 
    TCTATGTTCC TTCTCTTGTT GTTCTTCCTC TTTCTGTTAG AGATATTCCG 
    GCTGCTTCAG GTGTCAAAAT CTGCTACATT GTAGCCGGTG GATGGTTGGC 
    GTCACTTTGT GTAGCAGGGT ACACAGCTAT TGCAGTGAGA AAAATGGTGA 
    AAACCGAAAT GACGGAAGCC GAGCCTATGG CAAAACCATC ACCATTTTCA 
    ACACTTGAGC TATGGAGTTG GAGTGGAATC TTTGTTGTGT CGTTTGTTGG 
    TGCTCTGTTT TACCCTAATT CATTGGGGAC AAGTGCAAGA ACTTCTCTCC 
    CTTTCCTTCT TTCTTCAACT GTGCTAGGTT ACATTGTAGG TTCTGGGTTG 
    CCATCTTCTA TTAAGAAAGT TTTCCATCCG ATAATCTGCT GCGCGCTATC 
    TGCAGTACTT GCTGCTCTAG CTTTTGGGTA TGCTTCAGGA TCTGGACTTG 
    ATCCTGTTTT AGGAAACTAC CTTACCAAAG TAGCATCAGA TCCTGGTGCT 
    GGTGACATCT TAATGGGTTT TCTTGGCTCT GTCATTCTCT CTTTCGCTTT 
    CTCCATGTTC AAACAAAGAA AGCTCGTGAA GAGGCACGCA GCTGAGATCT 
    TCACATCTGT GATAGTTTCA ACGGTATTCT CGCTCTACTC CACTGCTCTT 
    GTTGGACGTT TAGTCGGTTT AGAACCTTCT TTAACGGTTT CAATCCTACC 
    TCGCTGCATC ACGGTTGCAT TGGCCCTTAG CATTGTATCA CTCTTTGAAG 
    GGACCAATTC GTCTCTTACA GCAGCTGTAG TCGTTGTGAC TGGTCTGATT 
    GGAGCTAACT TTGTACAAGT TGTTCTTGAC AAACTGCGTT TACGTGATCC 
    AATTGCTCGG GGAATTGCAA CTGCTTCAAG TGCTCATGGA CTTGGAACAG 
    CAGCTTTGTC GGCTAAGGAG CCAGAGGCTC TTCCCTTTTG TGCAATAGCT 
    TATGCTCTTA CCGGAATCTT CGGATCGTTA CTGTGTTCTG TTCCTGCCGT 
    CCGACAGAGT TTGCTAGCGG TCGTCGGCTG AGGATTGATG ATGTGGCGAA 
    ACACGATTGA TGGTCTCAAA GCTGGCGAGT TACTTAAAAT ATGAGAGCAG 
    TTTGCTTTGG ATGTCAAATA AGCTTGTATT AATGAAAAAG ATGATGGAAA 
    ATGTTTATTT ATTTTATTTT ATATATGC

    Gene models with high sequence identity

    1. AT1G32080.1 [+] show detail - membrane protein, putative
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam LrgB-like protein 1.4e-33

    See the detailed result >

    AT1G32080.1

    Model type
    Protein coding
    Short Description
    membrane protein, putative
    Computational Description
    membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR