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GT10796

CSHL Arabidopsis genetrap mutant lines

Original: GT10796

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT10796

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22812870 [Map]; Strand: w
      • AT5G56325.1 - [+] show detail - FBD-like domain family protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G56330.1 - [+] show detail - alpha carbonic anhydrase 8
        Distance: -898; Region: promoter
    Flanking Genome Sequence: GT10796 - 5-prime edge 
    CCCCTAGTTT ACGAGTTCTT GAGATTGAAC AGGTAATAAA TAATACATAT 
    TTGTTTTCTA CTACTAAATC AGTGAGATTG ATATATCTGT TCCACTATAC 
    ACTCCTATCC CAGGTCCATT ACCTTCGATA TTACCAACCA CGACCGT

AT5G56325.1

Model type
Protein coding
Short Description
FBD-like domain family protein
Computational Description
FBD-like domain family protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56330.1

Model type
Protein coding
Short Description
alpha carbonic anhydrase 8
Computational Description
alpha carbonic anhydrase 8 (ACA8); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process, cyanate metabolic process; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 5 (TAIR:AT1G08065.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR