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GT10805

CSHL Arabidopsis genetrap mutant lines

Original: GT10805

Phenotypes

Morphological phenotypes

Original description

  • stunted plants with chlorotic leaves
Anatomical entity
/structure development stage		 Phenotypes
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT10805

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2769194 [Map]; Strand: w
      • AT3G09060.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -764; Region: promoter
      • AT3G09070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT10805 - 3-prime edge 
    GTTTTCATCC TGGTATAGGA GATTAAACGG TGGAATGGTG GAGAGATCGT 
    TATCGGAGTC ATGGCCGGAG CTGAGGAATG GAGGAGGAGG AGGAGGAGGG 
    CCGAGGATGG TGAGGAGTAA TAGCAATGTG AGCTGGAGGA GTTCCGGAGG 
    TGGATCAGCG AGGAAAGTCA ACGGATTGGA TAGGAGGAAT AAGAGTTCAA 
    GGTACTCACC TAAGAATGGG GAAAACGGAA TGTTGAAGTT TTACTTGCCA 
    CATATGAAAG CTAGCCGGAG AATGAGCGGT ACAGGAGGAG CAGGAGGTGG 
    CGGCGGCGGA GGGTGGGCGA ATAGTCACGG GCATTCTATA GCGAGGAGTG 
    TAATGAGGCT GTATTGATCA ACAAAATTGC TCATTGGATG GTTTAATTAG 
    CTCTATGAAG CTGAACCTTT GTTTTTAGTA TTTCGTTGGT TTAGGTTTAA 
    TTTTGGTTCA ATTGGTTTAC TTTGTAATGC TAAGGAGGGG ATGCATTTTC 
    AAACGAATCA CTTGTTG

AT3G09060.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF740)
Computational Description
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G01170.1); Has 844 Blast hits to 758 proteins in 136 species: Archae - 0; Bacteria - 50; Metazoa - 319; Fungi - 62; Plants - 144; Viruses - 44; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR