GT109

CSHL Arabidopsis genetrap mutant lines

Original: GT109

Phenotypes

Morphological phenotypes

Original description

  • small spindly plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT109

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 648382 [Map]; Strand: w
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: 0; Region: intron1 (CDS)
      • AT2G02450.2 - [+] show detail - NAC domain containing protein 35
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT109 - 3-prime edge
    CTTAATATAT GAATAGAAAT TAAGCTTTCC TAATAGTTTG AGATGATTTA 
    TGTGTGTATT AGTATATATA TATGTGTGTT TATGTGAATG TATATTTACC
    AGGAAGTTCC CAAGGATCAT AGCGATAAAG ATCGAGGAAA GTGATGAGTT
    CTACATTAAA GCGTTTGCCT TCGACTTTTC GGCGAAGGTA AAACTCTATG
    AGTTCTTCTT CGGTAAGATG GAATCTAAAT CCGGGCATGA CCATGTCATG
    ATCATGATCA TCAGCTTCAT CTTCATCTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 648562 [Map]; Strand: w
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: 0; Region: intron1 (CDS)
      • AT2G02450.2 - [+] show detail - NAC domain containing protein 35
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT109 - 5-prime edge
    CTATGTCGAT CGATCGTTAA CAATTCTCAA TATCTTTAAA CGCTTCTCCC 
    TCTTTAGTTT CTTTCTTAAA TTAACCTAAT TAAACAACCT ACATATATAT
    CATAAGATAT ACAAATATGT GTATGTTTTT CATAATTAGC TTATGTTTGT
    TTAATTATAG ATATATGTAT ATGCAGCTAT GGCGGCGATA GGAGAGAAAG
    AGTGGTACTT CTATGTGCCA AGAGATCGGA AATATAGAAA TGGAGATAGA
    CCGAACCGAG TAACGACTTC AGGATATTGG AAAGCCACCG GAGCTGATAG
    GATGATCAGA TCGGAGACTT CTCGGCCTAT CGGATTAAAG AAAACCCTAG
    TTTTCTACTC TGGTAAAGCC CCTAAAGGCA CTCGTACTAG TTGGATCATG
    AACGAGTATC GTCTTCCTCA CCATGAAACC GAGAAGTACC AAAAGGTATT
    AATTCTACTA ACTCTATATA TATCCTATTC ATACGTACAT AGATATAACC
    CTAGCTA

AT2G02450.1

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02450.2

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
NAC domain containing protein 35 (NAC035); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 5401 Blast hits to 4721 proteins in 140 species: Archae - 0; Bacteria - 7; Metazoa - 144; Fungi - 68; Plants - 2924; Viruses - 5; Other Eukaryotes - 2253 (source: NCBI BLink).
Link
InterPro Scan - TAIR