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GT10918

CSHL Arabidopsis genetrap mutant lines

Original: GT10918

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT10918

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3374048 [Map]; Strand: w
      • AT3G10770.1 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10770.2 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT10918 - 3-prime edge
    TTTTCATCCA ACAAAGGATT CATAAGACAC AAAGCAGAGA AGGAGAGAGA 
    GATACGAGGC TTTTCTTCAT CTTTATGGCT TCTATGACCG AGAAGGAAGC
    TATGGTGGAT CCTTTTCTGG TCGAGGCTCT TCAAAATCCT CGTCATCGTC
    TCACCAGTTA GTCAATTTTC TCTCTTTCCC ACGATTCGAT TTTGCTTTCT
    CTCTGTTGTG TTTGATCTGA TTTTGGTCAT TTCATTTCCT GGTACTTTTC
    TAGGGTTTCA TAGAATTGGG GGACAATTAT GAGTTTCTCT AATTCTCGAT
    CCTGTGTTTG GTTCAATTAT AGTTAATGTT TTGGTAATTA GGGTTTGATT
    AGATCCATGA CTATTACCAA TCCTCTTGAT TGCTCTATGA CCCAAATCAT
    AATCACTTGT CTTTTTAGCT CAATCTGAAT CCTCATGAAC ATGTTAGAGT
    TTAATTACTG TATCTGGAAA GATTCTCTTA AAATGTGGTT GATGGGTGCT
    TAAAAGGTTG CTTCTTTTTT TGTTGGTTGG TGTGTGTTTC TTTAGTTTTG
    CGAATGGAGC TTGATATACA GAAGTTCTTT CAAAACCCTG AGCAGCTTCA
    GTTCGAATTC CCGCCTTTTT CAACATCGTA CCTGCGTCTT GCTGCACAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3374044 [Map]; Strand: w
      • AT3G10770.1 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10770.2 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT10918 - 3-prime edge
    CATCCCACAA AGGATTCATT TCACACAAAG CAGAGAAGGA GAGAGAGATA 
    CGAGGCTTTT CTTCATCTTT ATGGCTTCTA TGACCGAGAA GGAAGCTATG
    GTGGATCCTT TTCTGGTCGA GGCTCTTCAA AATCCTCGTC ATCGTCTCAC
    CAGCTAGTCA ATTTTCTCTC TTTCCCACGA TTCGATTTTG CTTTCTCTCT
    GTTGTGTTTG ATCTGATTTT GGTCATTTCA TTTCCTGGTA CTTTTCTAGG
    GTTTCATAGA ATTGGGGGAC AATTATGAGT TTCTCTAATT CTCGATCCTG
    TGTTTGGCTC AATTATAGTC AATGTTTTGG TAATCAGGGT TTGATTAGAT
    CCATGACTAT TACCAATCCT CTTGATTGCT CTATGACCCA AATCATAATC
    ACTTGTCTTT TTAGCTCAAT CTGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3374144 [Map]; Strand: w
      • AT3G10770.1 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10770.2 - [+] show detail - Single-stranded nucleic acid binding R3H protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10780.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: -963; Region: promoter
    Flanking Genome Sequence: GT10918 - 5-prime edge
    TCCTACTTTC TCCCTGGTTC TTTGTTTCCC GGAGATTAGA AGAGAAAACA 
    CATCAAGGAA ACAAAAAGGA GACAATTTCT GATGAGCATT TTCTGAGAGA
    GAAGAGAAGA GACGCGAAAC GATGAGGGTG AAGGAGATGA AAAGACTTTC
    TCGACCTTTA TCTCTCTCAA ATCGCAATCA AGTGGGGAAG AGAATAATAC
    GAAAGTTGCT TCCTTTCCTG TTTTTTTTTA TTCAT

AT3G10770.1

Model type
Protein coding
Short Description
Single-stranded nucleic acid binding R3H protein
Computational Description
Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 376 Blast hits to 376 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10770.2

Model type
Protein coding
Short Description
Single-stranded nucleic acid binding R3H protein
Computational Description
Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 381 Blast hits to 381 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10780.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: embryo, sperm cell, pedicel, pollen tube; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1529 Blast hits to 1527 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 818; Fungi - 344; Plants - 225; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Link
InterPro Scan - TAIR