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GT11027

CSHL Arabidopsis genetrap mutant lines

Original: GT11027

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11027

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3155892 [Map]; Strand: c
      • AT3G10190.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11027 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTGATGG 
    TTTTGTGTGC TTCACTGAGT TCTCACGAAT GATGGATCTC CAGCGTTGAT 
    CTTCCCTTTT CTTTTTTTTC AAAGTTTTTT TTTCCTGGTT TTGGCTATGC 
    CTATGAAGCT CTTTTTGCCC TTGTTCTAGG GTTACAAGAA TCTTTTGTTT 
    TCTGGGGAAT TAGGGTTTTT TTTAAGCTGA ATAAGCTGAA GGGCTAACAA 
    AAAAAAAATG AAATTTTGAG TATGAAGTAA TTAATAATAA AAATTCTGAT 
    ATAACCCATT CTTAAATTAA AAAAATTGCA TAAAAATGCT TTTAAATTTG 
    AAAATTTACT CAGTTTGCAG TTTTTTCAGC CAAAATTCTT TTATACCATT 
    AAGGCTAGGA CATGGGAGGC ACAATAATTT TTCCATTAAA TTGGGAAAAA 
    AAAACAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3155893 [Map]; Strand: c
      • AT3G10190.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11027 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTGATGGT 
    TTTGTGTGCT TCACTGAGTT CTCACGAATG ATGGATCTCC AGCGTTGATC 
    TTCCCTTTTC TTTTTTTTCA AAGTTTTTTT TTTCTGGTTT TGGCAAGGCC 
    AATGAAGCTC TTTTGGCCCT GGTTCAAGGG TAACAAGAAT CTTTGGTTTC 
    CTGGGAAATA AGGGTTTTTT TAAAGCTAAA AAAGCGGAAG GGCTAACAAA 
    AAAAAAAGGA AATTTTGGGT TTGAAGAAAT TAAAAAAAAA AATCCGGAAA 
    AAACCCATTC TAAAATAAAA AAAATGGCAT AAAAAGGCTT TTAAATTGGA 
    AAATTAACCC AGTTGGCAGC TTTTTCAGCC AAAATCCTTT TATCCCATAA 
    AGGCTAGGAC AGGGGGGGCC CAAAAATTTT CCCTTAAAAT GGGGAAAAAA 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3155893 [Map]; Strand: c
      • AT3G10190.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11027 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTGATGGT 
    TTTGTGTGCT TCACTGAGTT CTCACGAATG ATGGATCTCC AGCGTTGATC 
    TTCCCTTTTC TTTTTTTTCA AAGTTTTTTT TTCCTGGTTT GGGCAAGGCC 
    AATAAAGCTC TTTTTGCCCT GGTCCAAGGG TAACAAGAAT CTTTGGTTTC 
    CTGGGGAATA AGGGTTTTTT TAAAGTGGAA AAAGCGGAAG GGCTACCAAA 
    AAAAAAAGGA AATTTTGGGT ATGAAGAAAT AAAAAAAAAA AATCCGGAAA 
    AAACCCATCC TAAAATAAAA AAAATGGCAA AAAAAGGCTT TAAAATTGGA 
    AAATTTACCC AGTTGGCACC TTTTCCAGCC AAAATCCTTT AAACCCATAA 
    AGGCAAGGAC AGGGGAGGAA CAAAAATTTT CCCATAAAAT GGGAAAAAAA 
    AAACAAGGGC CAAATTGGCC AAATCCCCAA AAAGGAAGGT CCTAAATTCC 
    ATGGCCCCTT GAAAAAAAAA AAATCCT

AT3G10190.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1); Has 18786 Blast hits to 12756 proteins in 1414 species: Archae - 1; Bacteria - 149; Metazoa - 7817; Fungi - 3299; Plants - 4581; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).
Link
InterPro Scan - TAIR