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GT11095

CSHL Arabidopsis genetrap mutant lines

Original: GT11095

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11095

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 186769 [Map]; Strand: c
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: exon2 (CDS)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT11095 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGGGTACG GCGTTGGCTG 
    GAAACCTTTG ACGACTCCGG CACCACAGAT GGCTCCAAGA CATTGCATAA 
    TCATGTAGAA CACTGCTCTG GTCAGAGATA ACTTCCGAGC CAAGAACAGA 
    CCGAATGTTA CAGCAGGGTT GATGTGTCCA CCTAAAAACA CACAAACACA 
    AACACATGTT ACAGAAAGAT GTGAGCTTTT ATCTGAGAAA TCAACAGTAA 
    AATTGGTGTA ACATACAGAT CTAGATAAGC CCAAGCATCA AAAGAACCCA 
    AAGTTTCCTG CTTTATAACT GTTTTTGGTT CCTTTACATT TTCTAGGTCA 
    AACAGAGCAT GAACAAAAAC AGAGGACTCA CATAATGGTT TTCAGAAACA 
    AAACAGAGCA AATAAAGCAG AACCAAAACA GAGAACCCAC CAAAACAGAG 
    ATTACAGAAA AATGGGAAAA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12617864 [Map]; Strand: w
      • AT4G24400.1 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
      • AT4G24400.2 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT11095 - 5-prime edge 
    CCTACTTTCT CCCTGATCCT GGAGTACATT ACTGGTGGTG AACTGTTTGA 
    TAAGATTGTG AGTAGCTCTT GGTGATGATT TTTACAGCGT TTTACTCTGT 
    CAGATATTGT TAAATGATTC ATTTGTTTCA TTGCTACTAT AGGTTCGTAA 
    TGGACGACTT AGTGAGTCAG AAGCTAGGAA ATACTTTCAC CAGCTTATTG 
    ATGGAGTTGA TTACTGTCAT AGTAAAGGTG TTTACCACAG AGATCTAAAG 
    GTGAATACTT GCTAAGAATT AATACATTTC TACCACTTGT TCTTGATCTG 
    ATGATTGTCT TGTGTTAATT GCAGCCGGAA AATCTTCTGT TGGATTCTCA 
    AGGAAATCTC AAGATATCTG ATTTTGGCCT CAGTGCATTA CCTGAACAAG 
    TAATGGGGGT TCTCAGTGAC ATCTTTTCTT TCAAATTTTG AGAATTTAGT 
    TTGTTATTGG ATCATTATTG ACTAAATTAT CTTACTTTGA TCTGAAGGGA 
    GTTACCATCC TAAAGACAAC ATGTGGAACT CCCAATTACG TTGCTCCTGA 
    GGTAAATCAA ATATCATAAT GTTTTGAAAT TTTATGCCTT TCTTATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12617864 [Map]; Strand: w
      • AT4G24400.1 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
      • AT4G24400.2 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT11095 - 5-prime edge 
    CCTACTTTCT CCCTGATCCT GGAGTACATT ACTGGTGGTG AACTGTTTGA 
    TAAGATTGTG AGTAGCTCTT GGTGATGATT TTTACAGCGT TTTACTCTGT 
    CAGATATTGT TAAATGATTC ATTTGCTTCA TTGCTACTAT AGGTTCGTAA 
    TGGACGACTT AGTGAGTCAG AAGCTAGGAA ATACTTTCAC CAGCTTATTG 
    ATGGAGTTGA TTACTGTCAT AGTAAAGGTG TTTACCACAG AGATCTAAAG 
    GTGAATACTT GCTAAGAATT AATACATTTC TACCACTTGT TCTTGATCTG 
    ATGATTGTCT TGTGTTAATT GCAGCCGGAA AATCTTCTGT TGGATTCTCA 
    AGGAAATCTC AAGATATCTG ATTTTGGCCT CAGTGCATTA CCTGAACAAG 
    TAATGGGGGT TCTCAGTGAC ATCTTTTCTT TCAAATTTTG AGAATTTAGT 
    TTGTTATTGG ATCATTATTG ACTAAATTAT CTTACTTTGA TCTGAAGGGA 
    GTTACCATCC TAAAGACAAC ATGTGGAACT CCCAATTACG TTGCTCCTGA 
    GGTAAATCAA ATATCATAAT GTTTTGAAAT TTTATGTCTT TCTTATCATA 
    GCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12617863 [Map]; Strand: w
      • AT4G24400.1 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
      • AT4G24400.2 - [+] show detail - CBL-interacting protein kinase 8
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT11095 - 5-prime edge 
    TCCTACTTTC TCCCTGATCC TGGAGTACAT TACTGGTGGT GAACTGTTTG 
    ATAAGATTGT GAGTAGCTCT TGGTGATGAT TTTTACAGCG TTTTACTCTG 
    TCAGATATTG TTAAATGATT CATTTGCTTC ATTGCTACTA TAGGTTCGTA 
    ATGGACGACT TAGTGAGTCA GAAGCTAGGA AATACTTTCA CCAGCTTATT 
    GATGGAGTTG ATTACTGTCA TAGTAAAGGT GTTTACCACA GAGATCTAAA 
    GGTGAATACT TGCTAAGAAT TAATACATTT CTACCACTTG TTCTTGATCT 
    GATGATTGTC TTGTGTTAAT TGCAGCCGGA AAATCTTCTG TTGGATTCTC 
    AAGGAAATCT CAAGATATCT GATTTTGGCC TCAGTGCATT ACCTGAACAA 
    GTAATGGGGG TTCTCAGTGA CATCTTTTCT TTCAAATTTT GAGAATTTAG 
    TTTGTTATTG GATCATTATT GACTANATTA TCTTACTTTG ATCTGAAGGG 
    AGTTACCATC CTAAAGACAA CATGTGGAAC TCCCAATTAC GTTGCTCCTG 
    AGGTAAATCA AATATCATAA TGTTTTGAAA TTTTATGTCT TTCTTATCAT 
    AGCTA

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24400.1

Model type
Protein coding
Short Description
CBL-interacting protein kinase 8
Curator Summary
Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response.
Computational Description
CBL-interacting protein kinase 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to nitrate, root development, response to glucose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35410.1); Has 132292 Blast hits to 130130 proteins in 4671 species: Archae - 192; Bacteria - 15224; Metazoa - 49173; Fungi - 13311; Plants - 31935; Viruses - 538; Other Eukaryotes - 21919 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24400.2

Model type
Protein coding
Short Description
CBL-interacting protein kinase 8
Curator Summary
Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response.
Computational Description
CBL-interacting protein kinase 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to nitrate, root development, response to glucose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35410.1); Has 132609 Blast hits to 130467 proteins in 4740 species: Archae - 192; Bacteria - 15427; Metazoa - 49318; Fungi - 12831; Plants - 32044; Viruses - 538; Other Eukaryotes - 22259 (source: NCBI BLink).
Link
InterPro Scan - TAIR